Acanthopagrus latus (yellowfin seabream): 119017907
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Entry
119017907 CDS
T08233
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03440
Homologous recombination
alat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119017907 (palb2)
03460 Fanconi anemia pathway
119017907 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alat03400
]
119017907 (palb2)
DNA repair and recombination proteins [BR:
alat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
119017907 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
119017907 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
119017907
NCBI-ProteinID:
XP_036950966
LinkDB
All DBs
Position
1:complement(6298756..6305511)
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AA seq
1356 aa
AA seq
DB search
MDIVSRMENSVKDTLHCEEQLRTTLYCDDKEKLRKKLVLLQREYLRTAERLQRAERTEAV
RRHVRSRITQQNHQDQRDREVTPEPCQIPPPLKLDTQNKITSDVPQHQGPTGADYEMSRT
SPVIRFLLPSDAACPQTPDPCHDEAKSHRPSPALRLRSRRSRLRWEKRAAEGSRSTDNSE
EGLEQSERTETSRAEGSEEKVNTEGREVVNESEELFSGADSESPSLLLTHWNTCGPTETG
NMEGKERQGGQEEKTESRAEGKKESERSNLLPTCGSPAIHTEGRDGSQNKRKETEGGDKG
ETRRGDRIGQFCEDSSNQDTVQNAAEGIESEKSHDKSVEIKEEKREVVGGEHDVKGVGLL
DSCTLVEGLLFPAEYYVRTTRRMTSSQSQPDMQAVILSQLSSGRPRRRSRGRGRGLNRHT
HNYELSDERSEADFSLLTAASPSVGRRIESQVADTPAELNSPSSSEISDQISACQIDMDT
SFSPTVTTARPGRGRKRRGRGRGRPQTPRCAPQPDFGQTSDDPLPTSSPVSSFPSLEGAD
GPKTCITPQEAVPVPDDSQPASIHSTATQPSSGGNRAQCSSASGHQVYPIFLKSSGRTNR
SSHMSRCTESWRSLLLPSSPPAQTSLLPLPSLSSSLMINNLMNFDIPQDFHLPDDQFASL
KLHKLRQVAVESGVEHFTSPSFNTRRSIRRSEICHSSGDPVMPLPLQLSLTPTIPHSNNP
SEAKHTSTQSIDLQNLSREHKLTGKLTSQTDTVSAESVSVVQDCVANCVDQYKESDTVKD
DVISKSDELKIKESSVTSSEKQPDCPGLVLPLEDQGSTKHQKEDKAIIKTLCFEEPFNTC
TSVQTCNGSEAPGGSPVQHLNAKCPDEELKESSKSNTSPARVHENPPLHSIHSQLLLSPP
VASTPFITPHLRSSALLSSPTLPSLGFTPHCAALPLTSSPSAPAITLPPPHSPSIQALSP
PALSPCPSFTSLPPSQPPTSPAGQIQASSEQSERVEVVEPDTSVHSQGSGRQMGLTIEET
VEEHTMTCTHTLKAPAGGCLVDACCLLGSSGGLCVAAAGKWAVCLWSQTSASKWSLIHTW
AFSEPVINVFPVPDAAGLICVTLGQLEIREVRMLSCSSLLQVLLCDGLVQAVAGVSRSRV
VTSSHSASGSTLQVLTLSDSGSTQSCQPLVSPGVCVGALAPVDGLSDALIGTDEGGCLFV
WNLKTGQLLQRISLGDGLSHTACLRGFSSCGVLFVLLQHQLLSPEEEEKEEESKKSALLS
LIAVNPLSGKSVLATHLYAPKAWSGRLCEADVNRGSVVGLSQSGCVCVWELGRRGASRMV
WAPESEGWQMARWGAGGTLLTGHHNGDVTLHYDGTS
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggatatagtgagcaggatggagaacagtgtgaaagataccttacactgtgaggagcag
ctgaggactacactgtactgcgatgacaaggagaagcttcgtaagaagttggtgttgttg
caaagggaatacctgaggacagcagagagacttcagcgtgccgagcgtacagaggcagtg
aggagacatgtgaggagcaggattacccagcagaaccatcaggaccagagagatcgagag
gtcacacctgaaccttgtcagatcccacctccactgaagctggacacgcagaacaagatc
acatcggatgtacctcagcaccagggacccactggagcagattatgaaatgtccaggacg
agcccggtgatcaggttcctgctcccttctgatgctgcttgtccacaaactccagatcct
tgccacgatgaagctaagagtcacagacccagtcctgccctgcgcctgaggtcacgacgc
agccgcctacgctgggagaagcgggctgctgagggcagcaggagcacagacaacagtgag
gaaggactggagcagagtgaaaggacagagacttccagagcagaaggaagcgaagagaaa
gtcaatacagagggaagagaggttgtgaatgaaagtgaggagcttttttctggtgcagat
tctgagtctccctccctgctgctaacacactggaacacatgtggaccaactgaaacagga
aatatggagggaaaagagagacaaggaggacaagaagaaaagactgaatcaagagctgaa
gggaaaaaagaatcagagcggtccaatttgttgcccacatgtgggagccctgctatacac
actgaaggaagagatggctctcaaaataaaagaaaggagactgagggaggagataaaggt
gaaactcgcagaggagacaggattggacagttttgtgaagacagcagtaatcaagatact
gtacaaaatgcagcagaggggatagaaagtgaaaaaagtcatgataaatcagttgaaata
aaagaagaaaaacgtgaggtggttggaggagagcatgatgtaaagggagtgggtctcctg
gactcctgtacattagtggaagggctactttttccagcagagtactatgtgcgaaccaca
agacgtatgacatcatcacagagccaacctgacatgcaggccgtcatactctcccagctg
agcagcggacgacctcgcaggaggagccggggccgcggcagaggattgaacagacacaca
cacaactatgagctttcagatgaacgttctgaggcagatttctccttactgacagctgca
tccccatctgtaggacgtcgtattgagtcacaggttgctgacacgcctgctgagctgaac
agtccgagctccagtgagatttcagatcaaatctcagcttgtcagatcgatatggacact
agtttttctcctacagtcaccactgctcgtccaggaagaggcaggaagagaagaggtaga
ggcagagggagaccacagacccctcgatgcgcccctcagccagactttggacaaacctca
gatgatcccctccccaccagctccccagtctcttccttcccatcgcttgaaggagctgat
ggaccaaagacctgcattactcctcaagaagctgtcccagtgccagatgactcccagcct
gcatccattcacagcacagctacacagccttcctctggaggtaatagggctcagtgtagc
tctgcctctggacatcaggtctatcccatctttctgaagagcagcggaaggacgaacaga
tcctcacatatgagcagatgcacagaaagctggcgatctctcctcctgccctcctctcca
cctgcacagacgtctctgcttcctctgccttctctgtcttccagcctgatgataaataac
ctaatgaactttgacatcccacaagacttccatctccctgatgaccagtttgcctcccta
aagctgcacaagcttcgccaagtcgctgtggagtcaggagtcgaacattttacttctcca
tctttcaacacacgcaggagcatccggcgctctgagatttgccacagcagcggtgaccca
gtgatgcctcttccactccagctcagcctcacacccacaattcctcattcaaacaatccc
agtgaagcaaaacacacttctacacaatccatagacctccaaaacctgtcaagagagcac
aagctcacaggtaaattgacaagccagactgacaccgtctcagcagaatctgtgtcagtt
gttcaagattgtgttgctaactgtgtcgatcagtataaagagagtgatactgtgaaggat
gatgtcatcagtaagtcagatgagctcaaaataaaagagtcttctgtcacttcatcagaa
aaacaaccagattgtccaggtttagtccttcctttggaggatcaggggtctacaaaacac
caaaaagaagacaaagctatcatcaagactctttgctttgaggagccttttaacacctgc
acctctgtacagacatgtaatggcagtgaagctccaggagggtctcctgtgcaacatctg
aatgcaaaatgtcctgatgaagagttaaaggaatcctcaaaatctaacacaagtcctgcc
agagtacatgaaaatccaccgctccacagtatccactcccagctcctgttgagccctcct
gtggcatcaactcccttcataaccccccacctgcgctcctctgccctcctctccagcccc
acactaccctcacttggattcaccccccactgtgctgcccttcccctgacatcctctccc
tctgccccagctatcaccctgcctcctcctcatagcccgtccatccaggccctctctcct
ccagctctctctccatgtccatccttcacttccctccctcctagccaaccccctacttcc
cctgccggccagattcaggcttcatctgagcagtccgagagggtagaagtggttgaaccg
gataccagcgtccactcacagggctcaggccgtcagatgggcctgacgatagaggagaca
gtggaggaacacacgatgacatgcacacacacattaaaggccccagcaggaggctgtctg
gtggatgcgtgctgtctgctcggatcctcaggtggtttgtgtgtagcagcagctggaaaa
tgggcagtgtgtctctggagtcagacttcagcttctaaatggagcttaatacacacctgg
gctttcagtgagccagtgatcaatgtgtttcctgtcccggatgctgctgggctgatttgt
gtgactttgggtcagttagaaatcagagaagtgaggatgctgtcgtgctccagcctcttg
caggtgctgctctgtgatggacttgtccaggctgttgctggagtgtccaggtccagagtg
gttacctcctcacactcagcatctggttccaccctgcaggtgttgacgctgtccgacagt
ggaagcacgcagagttgtcagcctctggtgtctcctggtgtttgtgtcggggccctcgct
ccggtggacggactctcagacgctctgatcggcacagatgagggaggatgcctctttgtc
tggaatttgaagactggacagctgctgcagagaatcagcctcggagatggtttatcacat
acagcctgtctcagaggattctcctcctgtggagtgttatttgtcctgctgcagcatcag
ttactcagcccagaggaggaggagaaggaggaggaaagcaagaagtccgccctgctctct
ttgattgctgttaaccctctgagtggaaaatctgtcctggctactcatctgtacgcgccc
aaagcctggtctggcaggctgtgtgaagctgatgttaacagaggcagcgtggtgggtctg
agtcagagcggttgtgtgtgtgtgtgggagctcgggcgtcgcggggcctccaggatggtg
tgggctcctgagagcgaaggctggcagatggctcgatggggggcaggaggtacgctgctg
actggacatcataacggagatgttactttacactacgatggtacgagttag
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integrated database retrieval system
