Acanthopagrus latus (yellowfin seabream): 119018020
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Entry
119018020 CDS
T08233
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03420
Nucleotide excision repair
alat04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119018020 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
119018020 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
alat04121
]
119018020 (ddb1)
03400 DNA repair and recombination proteins [BR:
alat03400
]
119018020 (ddb1)
Ubiquitin system [BR:
alat04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
119018020 (ddb1)
DNA repair and recombination proteins [BR:
alat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
119018020 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
119018020 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
119018020
NCBI-ProteinID:
XP_036951240
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All DBs
Position
4:complement(6918072..6989124)
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSADDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QESKALVSEWKEPQGRNISVAACNHTQVVLAVGRALYYLQILAGELKQISTTEMEHEVAC
LDITPLGDSGGESPLCAVGLWTDISARVLRLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLLTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSMVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggtaacagcccagaagccgacggcagtgaacgcctgcatcaca
ggtcacttcacttctgcggacgacctcaatctgctcatagctaaaaacacacggttggag
atctatgtggtcacagcagaggggctgaggcccgtcaaagaagtgggcatgtatggaaag
attgctgtcatggagctcttcaggccaaagggtgagagcaaagacctgctgttcattctc
acatcgaagtacaacgcctgcatcctggaatacaagcagaatggggagagcattgacatc
atcactcgtgcccacggcaatgttcaggatcgcattggacgtccttcagagactggtatt
attggaattgtggacccagaatgtcgtatgattggtctacggctgtatgacggtttgttt
aaggtgatcccattagacagggacaaccgtgagctcaaggccttcaacatcagactggag
gagctacaagtcattgatgttcacttcctgtatggctgccaggccccaactgtatgcttc
atctaccaggacccccaaggacgccatgtaaagacctatgaggtttctctgagggagaag
gagttcaacaagggtccctggaaacaggagaatgttgaggctgaagcatctatggtcatc
ccagtgccagagccatttggtggcgctataatcataggacaagagtccatcacctaccac
aatggagacaaatacttggccattgcaccaccaactatcaagcaaagcaccattgtctgt
cacaaccgggtcgacccaaatggatcacgttacctgctgggggacatggaggggcgtcta
ttcatgctgctgttggagaaggaggagttaatggatgggacagtggctctcaaagaccta
catgtggagctgcttggagagacatccattgctgagtgtttgacctacttggataatggt
gtggtctttgtgggctccagactgggtgactcccagttagtgaagctcaacgtggacagc
aatgaccagggctcatatgtggcggtgatggagacattcaccaatctgggtcccattgtt
gacatgtgtgttgttgacctggagaggcaaggccagggccagttggtgacatgctctggt
gccttcaaggagggctctctccggatcattcgcaacggcattggcattcatgagcatgcc
agcattgaccttcctggaatcaaaggtttgtggccgctccgttcagaggccggcagagag
acagatgatatgcttgtgctgtctttcgtgggtcagacacgagtgttgatgctgagtggc
gaggaagtcgaagagactgaacttccaggctttgtggacaaccagcagacattttactgt
ggaaatgtggcgcaccaacagctcattcaaataacgtcaggttctgtgcgcctcgtgctc
caggaaagcaaggcattagtgagcgagtggaaggagccacagggcaggaacatcagtgta
gccgcctgcaaccacactcaggtggtgcttgccgtgggacgggccctctactacctgcag
atcctcgctggagagctcaaacagatcagcaccacagagatggagcatgaggtggcgtgc
ctggacatcacacctttgggggacagcggcggtgagtcaccactctgcgctgtgggactc
tggaccgacatctcagcccgtgtgctcagactgccctgctttacagccctgcacaaggaa
atgctgggtggagaaatcatcccccgctcaatcctaatgaccacgtttgaaggcagctac
tacctgctgtgtgcgcttggagatggagcgctcttctactttggtctggacctgctgact
ggtgccctgagtgagcgtaagaaagtgacccttggcacccagcccactgtgctgaggacc
ttcagatccctgtcaacctccaatgtctttgcctgctccgaccgacccaccgtcatctat
tcctccaaccacaagctggttttctctaatgtcaacctcaaggaggtcaattatatgtgc
ccactcaactctgagggctatcctgacagtctggctctggccaacaacagcactctgacc
attggcaccattgacgagattcagaaactccacatccgcactgttcccctctatgagtct
cccaggcggatctgctaccaggaggtttcccagtgttttggggttttgtccagcagggtg
gagattcaggatgtgagcggcaccacatctgctgttcgccccagtgcgagcactcaggct
ctctccagcagtgtgagctccagcaagctcttccctagcagcacttctccccacgagacc
tccttcggtgaagaggtggaggttcacagtctgctcgtagtggatcagcacacctttgaa
gttctccacgcccatcagttcctccctagtgagtatgccctcagcatggtgtcatgtcgt
ctgggaaaagacccgtcagtgtatttcatcgtcggcaccgccatggtgtacccagaggag
gccgagcctaaacagggacgcatcatcgtcttccactacaccgacggtaagctgcaaact
gtggctgagaaggaggtgaaaggagctgtctactctatggtggagttcaatggcaaactg
ctggccagcatcaatagcacagtccgtctgtacgaatggacggctgagaaggagctgagg
actgagtgtaaccactacaacaatatcatggccctttacctgaagaccaaaggagatttc
atcctggtgggagacctgatgagatccgtcctgctactggcatacaaacccatggagggc
aactttgaagagattgcacgtgatttcaatcctaactggatgagtgcagtcgaaatcctg
gacgatgacaacttcttgggggcagagaatgccttcaatctgtttgtctgccagaaggac
agtgctgccaccacggacgaggagcggcagcaccttcaggaagtgggggtcttccacctc
ggggagtttgtcaatgtcttctgccacggctcactggtgctgcagaatctgggcgagagc
tccacgcccacccagggctctgtgctctttggcaccgttaatggcatgattggtctggtg
acgtccctgtctgaaggctggtacagcctcctcctggacctgcagaaccgcctcaacaag
gtcatcaagagcgtgggcaagatcgagcacagcttctggaggtccttccacacagagcgt
aagacagaacaagcaacgggattcatcgacggggatctgattgagagcttcctggatcta
ggccgagccaagatgcaggaggtcgtgagcactctgcagattgatgacggcagcggcatg
aagcgtgaggccacagtggacgaggtcattaagattgtggaggagctgacgaggatccac
taa
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