Acanthopagrus latus (yellowfin seabream): 119018299
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Entry
119018299 CDS
T08233
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
119018299
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
alat01009
]
119018299
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
alat04515
]
119018299
Protein phosphatases and associated proteins [BR:
alat01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119018299
Cell adhesion molecules [BR:
alat04515
]
Cadherins
Protocadherins
119018299
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
119018299
NCBI-ProteinID:
XP_036951735
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Position
4:16394144..16397739
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AA seq
889 aa
AA seq
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MFNSRHISLSKRGGVWGLCIFLLYSSPLSCFANFSQAKELIYKIKEGLPRGTFIGAIGVD
LNLDFTVEPPFLFSLLQKKVSEQYVNLNNSSGELYTSATEIDRETLCPDNSDGQGCVLSL
DVFVLPQQYFQLVKVKIYIEDVNDNRPKFPVDEITMSVPENTPINARYAVEQSAVDPDLG
LHGVQTYWLVNDFGVFTLDVEENEGGELTPFLIVTDALDRETQAEYITDIIAEDGGTPPL
LGAATLKIVITDVNDNCPQYTESQINVTLHGNTTKGAHLARLHAFDPDLGANAQISYAYS
ERVPRDTRSLFHLDKITGVIKLAGKIDTGTATFYKLIILANGPGCIPAVATVSVRIIKVV
TGPPAIIPRYIAPEKDGVVTVKESEPTFSPIAFFTVKNIDMNQRVDCHLEGTGPFRLGPY
QLLKNEYLLETTEPLDYEKTQEYELIVVAKNSRDLIIKTFLKVQVLDENDNAPVFEQSLV
KIPLEENNPPNTFLTQLQATDQDSGSRGEVIYLLGGDAPGIFLVDRVTGVLTVATTLDRE
EKETYRFIVRAVDQGTPRRESIATVVVTVQDRNDNSPRFINKDFTFFVPENFPGYGEIGV
LSVTDADAGENGWVALSILNGSDIFMIDTARGALRAKTSLDREQQGTYQLWIEAIDGGEP
ALSCITMVTVLLLDVNDNPPIVLFPQSNQSYMLVLPNTLPGTSITEVYAVDKDTGMNAVI
AYSIVKRKGGEPGSFAIDPETGNITLKRELSNRGLYSLLVKVSDHGQPEPLYSTVMVNFF
VNETVSNESYIQSLLTREADIEVEERPWYIGQMREGPERYELFPCQPVLIVLSVTCLGLF
FMVVSLTSYICCKRFKKHREKSSEVEIPLKRKNDSTQVVNRKLRQISNI
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacagcagacacatcagccttagcaaaagaggaggagtatggggattgtgcatc
ttcctgctttactccagccctctttcctgttttgcaaacttcagccaagcaaaggagctc
atctataagataaaggagggattacccagggggaccttcataggggccattggagtggac
ttaaacttggatttcactgttgagcccccctttttattcagtctcctgcaaaagaaggtc
agtgaacagtacgtgaacctaaataattccagcggggagctttacacatctgctacagag
attgacagggagactctctgtccggataactcggacgggcagggatgtgtcctctcactg
gatgtgtttgttctgcctcagcagtactttcagctcgtcaaagttaagatctatattgag
gatgtgaatgacaacaggccaaagttccctgtggatgagatcactatgtctgtcccagaa
aacactcccatcaatgctcggtatgcggtggagcagtctgcagttgatcctgacctgggt
cttcatggagtccagacctattggcttgttaatgacttcggtgtgttcacattggatgtg
gaggaaaatgaggggggtgagctgacaccctttctcattgtgacggatgctttagacagg
gaaacccaggctgaatacattacagatatcatcgcagaggatggggggacccctcctcta
ctcggtgcagctactttaaaaattgtcatcacagatgtcaatgataactgcccccaatac
acagagtcacaaattaatgtcactctgcatgggaataccaccaaaggggcccatttggca
cgtctacatgcttttgaccctgaccttggtgctaatgctcagatcagctatgcttacagt
gaacgtgtgccaagggacaccagaagcttgttccatttggacaaaatcacaggggtgatc
aagctagcagggaaaatagacactggcacggccacattttacaaactcattattctggcc
aacgggcctggttgtattcctgctgttgccacggtttccgtccgtatcatcaaagttgtt
acaggaccccctgctatcataccccgctacattgcaccggaaaaggatggtgtggtgaca
gtaaaggagtctgagccaacattttctccaatagctttttttactgtcaaaaacattgat
atgaaccaaagggtggactgccatttggaagggactggtcccttcaggcttggcccctat
cagctgttaaagaacgaatacctgctggagactacagagcccttggactatgagaagaca
caggagtatgagctaattgtggttgctaagaattctcgagatctcatcatcaagaccttc
ctgaaggtgcaggtgttggatgagaatgataacgcgccagtgtttgaacagtctttggtg
aaaatacctttggaggagaacaatccaccaaacacctttctgacccaactccaagccaca
gaccaggacagcggaagccgcggagaggtcatctacctcctcggaggtgatgccccaggg
atctttttggtagatcgtgtcacaggtgtcctgactgtggcaacaacgctggaccgtgag
gagaaagagacgtaccggttcatcgtcagagctgtggaccaggggacacccaggagggaa
tcgatagccactgtggtggtgaccgtgcaagaccgcaatgacaacagtccacgcttcatc
aataaggacttcacgttctttgtgccagagaacttccctgggtacggggagatcggggtc
ctctctgtgacggatgctgatgcaggggaaaatggctgggtggcgctttccatcctaaat
ggcagcgacatcttcatgatagacacggcacgaggggcactgagggccaagacatcactc
gaccgtgagcaacaagggacataccaactgtggatcgaggccatcgatggtggtgagcct
gcgctttcctgcattactatggtgaccgtgctattgttggatgtaaatgacaacccgcct
attgtcctcttccctcaatccaatcagtcttacatgctagtactgcccaatacactacca
ggaacatcaatcacggaagtctacgctgtggataaggatacaggcatgaatgctgtgatc
gcatacagtattgttaagaggaaaggtggtgagccagggtcgtttgccattgacccagaa
acaggaaatatcacgttaaagagggagctcagcaaccgcggcctctacagccttctggtg
aaggtcagtgatcatggtcagcctgaaccgctgtactcaacagtcatggttaactttttt
gtcaatgagacagtaagcaatgagagctacatccagagtctgttgaccagagaggctgac
attgaagtagaggagaggccctggtacattggccagatgagagaggggcctgagaggtat
gagctgttcccctgtcagcccgtcctcattgtgctttcagttacatgtcttgggctgttc
ttcatggttgtttcactgacatcttacatatgctgtaagagatttaaaaagcaccgggaa
aaaagctcagaagtggagataccattaaaaaggaagaatgactcaacacaggttgtgaac
agaaaactcaggcagatctcgaacatctga
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