Acanthopagrus latus (yellowfin seabream): 119018358
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Entry
119018358 CDS
T08233
Symbol
pcdh17
Name
(RefSeq) protocadherin-17 isoform X1
KO
K16499
protocadherin delta 2
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
alat04515
]
119018358 (pcdh17)
Cell adhesion molecules [BR:
alat04515
]
Cadherins
Protocadherins
119018358 (pcdh17)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
119018358
NCBI-ProteinID:
XP_036951846
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All DBs
Position
4:complement(16774761..16828607)
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AA seq
1141 aa
AA seq
DB search
MYLSIFFFLLLWAHALTLKNLNYSVPEEQGPGTVIGNIAKDARLGLEQVGQAGQGKKANF
RVLENSAPHLIDVDPQSGLLYTKQRIDRETLCKRNPKCQLSMEVFANDKEICMIKIDIQD
INDNSPTFPSDQIDIDISENAVPGTRFPLTSAHDPDAGENGLKTYQITRDDYNLFSLEVK
SRGDGTKFPELVIQRPLDREERSHHTLILSATDGGEYPRSGTMQINVKVIDSNDNSPVFD
QPSYVVEIPENSPPGKVLIDLNATDPDEGNNGQVVYSFSGYAPERIRELFSIDSRTGVIK
IQGEIDYEESPVIEIDIQAKDLGPNPIPGHCKVTVKVLDRNDNWPSIGFVSVRQGAISEA
APPGTVIALVRVTDKDSGRNGQLQCRVLGNVPFKLEENYDNFYTVVTDRPLDREVQDEYN
VTIVAKDNGIPPLNSTKSFTVKILDENDNVPRFTKSVYLLQIPENNIPGEYLGSVLAHDP
DLGQNGTVYYSILNSNVSGGDVNTYVNVNAANGAIYAVRSFNYEQIKYFDFKVLAKDAGS
PHLESNATVRISVLDVNDNIPVIVLPLLLNDTAEIHVPRNVGVGYIVTTVRAVDNDYGES
GRLTYEISDGNEEHLFEIDPVTGEVRTAHPFWDDVSPIVELIIRVSDHGKPTLTAAARLI
VKASDGRPPDGLPRTKDNQNWDMSLPLIVTLSIISIMLLAAMVTIAIKCKRENKEIRTYN
CRIAEYSHPQLGKGKKKKINKNDIMLVQSEVEERDAMNVMNVVSSPSLATSPMYFDYQTR
LPLSSPRSEVMYLKPTANNLSVPQGHVGCHTSFTGPVTSTTDTPTNRMSIIQTDNFPTEP
NYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSAKEALKLKAT
GVKPPPLEQDEDCVNCTEECRVLGHSDRCWMPQFPAGGNQAEGVDYRNNMFVPAGMETVP
EAETYETVNPNGKKTFCTFGKERRDHTILVANVKPYLKAKRALSPLLQEVPSASSSPTKV
CSTMSPCSSVKSPADGAEGKPPPATCSGHYGPPDGQYLSPTKQTRDQGVYPPLPPSDPVA
KVLAEARSRISQEAAGEMECVLEQVEPDGSRDRMDADQVVRDIDKLLQDCRGSEATGTLR
K
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgtatctttctattttctttttcctcctcttatgggctcacgccctgacattgaaaaac
ttgaattactctgtcccggaggaacaaggtccggggaccgtgattgggaacattgccaaa
gatgccagactcggactcgaacaggttggacaggcaggacagggtaagaaagccaacttc
agggtgctggaaaactcagctccgcatctcatcgatgtggacccccaaagcggactcttg
tatacaaagcagcgcattgacagggaaacgctgtgtaagagaaaccccaagtgccagctc
tccatggaggtgtttgccaatgacaaggagatctgcatgatcaaaatagatattcaggat
attaacgacaactcacccactttcccctcggatcagattgatattgacatttctgaaaat
gcagtgccagggacacgctttcccctgaccagcgcacatgacccagatgcaggggaaaat
ggcctgaaaacctatcaaataacacgcgacgactacaatctcttttccttggaggtaaaa
tcccgtggggacgggactaaattcccagaattagttattcaacgaccgttggatcgagaa
gaacgaagccatcacacccttattctgtctgccactgatgggggggaatatcctaggtcg
ggcaccatgcagataaatgttaaagttatcgattccaatgacaatagccccgtgtttgat
cagccctcatatgttgtggaaattcctgaaaattcccctcccggcaaagtcctaatcgat
ttaaatgctactgatccagatgagggcaacaatggacaagtagtctattcttttagtggg
tatgccccagagagaatcagggagctcttctccatagattcaagaacaggggtcataaag
attcagggcgaaattgactacgaggagagccctgttattgagattgacatccaggcaaag
gatctaggtcccaatccaatcccaggccattgtaaagtcactgttaaagtgcttgaccgg
aatgataactggccatcgataggctttgtgtctgtgagacagggagccatcagtgaggca
gcacctccaggcactgtcattgctctggtccgtgtcacagacaaggactcaggcaggaat
gggcagcttcagtgcagagtgctgggtaatgtcccgtttaagcttgaggaaaactatgat
aacttctatacagtagtgacggacaggcccttggacagagaggtacaggatgagtacaat
gtcaccattgtggccaaagacaatggcattcctcctcttaactcgacaaaatccttcaca
gtaaagattctggatgagaatgacaatgttcctcgctttaccaagtcagtttatcttctt
cagatacctgagaacaacatcccgggggagtaccttggttcagttctggcacatgaccca
gaccttggccagaatggcacagtgtactacagcatactcaactcaaatgtgagtggtggt
gatgttaacacctatgttaatgtaaacgctgctaatggagccatctatgctgtgcgctct
tttaactatgagcaaattaagtatttcgactttaaggtcctcgctaaagatgccgggtcg
cctcacctggagagcaatgccaccgtgcgcatcagtgttctggatgtcaatgataacatt
cctgtcatagttctgcccctactcctaaatgatacggctgaaatccatgtgccgcgtaat
gttggtgttggctacattgtcaccacagtgagagcggtcgataatgactatggtgagagt
gggagactcacctatgagatctcagatggaaatgaggagcacctcttcgagattgatcca
gtgacaggggaggtgcgaacagcacatcccttttgggacgatgtgagcccaattgtggag
ctgatcatccgagtgtcagaccacggcaagccaaccctcaccgctgccgccaggctcata
gtcaaggcctcagatggacgtcctcctgacggactgccacgcacaaaggacaatcagaac
tgggacatgtcccttcctctcattgtaactctaagcatcatatctatcatgcttctggct
gccatggtgactatagcaatcaagtgcaagcgggaaaacaaggaaatccgtacctataat
tgtcgcattgcagagtactcgcaccctcagctggggaaaggcaagaagaagaagattaac
aagaacgacatcatgctggtgcagagcgaggtggaggagcgggatgccatgaatgtgatg
aatgtggtaagcagcccttcgttggccacctctcccatgtactttgactaccagacacgc
ctgccactcagctcaccaaggtcagaggtcatgtacctcaagcccactgccaataacctc
agcgtgccccaaggccacgtgggatgccacaccagcttcacaggcccagtcaccagcact
acagacacacctactaaccgcatgtccatcatacagacggacaatttccccactgagcct
aattatatgggtagcagacaacagtttgttcaaagtagttcaacattcaaagaccccgag
cgagcgagcctgagagacagcggtcatggcgacagcgaccaggccgacagcgaccaggac
accaacaaaggctcctgctgcgacatgtctgcgaaagaagccctcaagttaaaggccacg
ggcgtgaaaccgccgcctctggagcaagatgaggactgcgtgaattgtacagaggagtgc
cgagtactgggtcattctgaccgctgctggatgccccagtttcccgctggaggaaaccag
gcagagggtgtcgactaccgcaacaatatgtttgtgccagcggggatggagacggtgccc
gaggcagagacctacgagaccgtcaaccccaatgggaagaagacgttctgtacttttggg
aaagagaggcgtgaccacaccatcctggtcgccaacgtcaagccctacttgaaggcgaaa
cgtgccctcagtccactgctccaagaggtaccctcagcctctagcagtcctaccaaagtg
tgctccaccatgtccccctgctcctcagtcaaaagcccagccgatggggctgaaggtaaa
cctcctcctgctacctgctctggccactacgggcctcctgatggtcagtacctgtcaccg
accaaacaaaccagagaccagggggtctacccacccctgcctccctcagacccagtggcc
aaggtgctcgcagaggcccgctccaggatcagccaagaggcagcaggtgaaatggagtgt
gtcctggagcaggtggagcccgatggaagccgcgacagaatggacgctgaccaggtggtg
agagacatcgacaaattattgcaggactgcagaggaagtgaggccaccggcacactcagg
aagtga
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