Acanthopagrus latus (yellowfin seabream): 119018891
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Entry
119018891 CDS
T08233
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03013
Nucleocytoplasmic transport
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119018891 (thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
119018891 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119018891 (thoc5)
03041 Spliceosome [BR:
alat03041
]
119018891 (thoc5)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
119018891 (thoc5)
Spliceosome [BR:
alat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119018891 (thoc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
119018891
NCBI-ProteinID:
XP_036952796
LinkDB
All DBs
Position
5
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AA seq
683 aa
AA seq
DB search
MSSDALKKRKSKVLRSEGGTPEMKRGRELDQQDVRVYSEEVELDGRDPEQDYLLYKESCE
SLATLMSEIQDLKANGAKEGCAEVEQKRMQSCIHFMNLKKLNRLAHMRLKRGRDQTHEAK
QRVDVLHLQLQNLLYEVLHLQKEISKCLEFKSKHEDIDLVSEEEFYQEAPAEISRPHLTT
NDPHQLTLARLDWELEQRKRLAEKYKESLATKEKIQKSIEVKKEHLTSLQPGLNAIMQAS
LPVQQYLSMPFEQIQKQTEVARHLPPPLYVLFVQANAYGQACDKNLTVSISGDVDEAKAL
SKPPEDSQDDESDSDAEEEQEKTKRRRPTTGGQLDEKRKEMLKRHPLSLCLDLKCKDGSI
LHLYFYYLMNLNIMTVKTKVSTSTDLSTAISAGDLLKSDTLLSCLYTGDHGRETPNPANR
YQFDKVGIVSFVDYVDELGHPYMWVQTLGGLHFPKDSSEGVRVGSSLSASQMESTMKLLR
GRVQSRLALHKQFASLEHSIIPVSSECQHLFPAKIMSRLARWTTITHEDYMGLPYTRHVT
DAGLAKETDLYFMTVVERGTARLHAAVVLSPRYPAVSPLFSLCLSWKGERSGRTDDNLRA
MESEVNVFKSELQGPRPGHQLLTNQISRLCVCLDVYLETEGQDDGVEGPREFPREKMCLR
TVRGPNRLKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggacgccctgaaaaagcgaaagtccaaggttctccgcagtgaaggaggaacc
ccggagatgaagcgaggacgcgaattggaccagcaggatgtgcgtgtgtatagtgaggag
gtggagctggacggcagggaccctgagcaggactacctgctgtacaaggagtcatgtgag
agtttggctacactcatgagcgagatccaggatcttaaagccaacggagcaaaagagggg
tgtgccgaggtggagcagaaacgtatgcagagctgcatccacttcatgaatctgaaaaaa
ctcaatcgtctggctcatatgcgactaaagcgaggcagagaccagacacatgaggcaaag
cagagagtggatgtgcttcacctccagttacagaacctgctgtacgaagttttgcatctc
cagaaggagatcagcaagtgtctggagttcaagtctaaacatgaggatatcgacttggtg
tctgaggaggagttttaccaggaggcgccagcagaaatttccaggccccacctaactaca
aatgatccccaccaactcacactggcacgtctagactgggagcttgaacagaggaagagg
ctggctgagaaatacaaagagtcactggcaacaaaggagaagatccagaagagcatcgag
gtgaagaaggaacatctgaccagcttgcagccaggactcaatgccatcatgcaggcctct
ctcccagtgcagcagtacctgtccatgccatttgaacagattcagaaacagacagaggtt
gcccgccatctgcctccacctctctatgtcttgtttgttcaagccaatgcctatggccag
gcctgtgacaagaacctgactgtctccattagtggtgatgtagatgaggccaaggccctg
tccaaacctccggaagactcccaagatgacgagagtgattcagatgcagaggaggagcaa
gagaaaacgaagaggaggcggccgactactggtggccagctggatgagaaaagaaaggaa
atgctgaaaaggcatcctctgtccctctgcttggatctcaagtgtaaagatggcagcatc
ctccacctctacttctactatctgatgaatctgaacattatgacagtcaagaccaaggtc
tccacctccacagacctcagcacagccatcagtgccggggatctgctgaaatcagatact
ctgctcagctgtctctacactggcgaccatggacgtgaaacaccaaatccagctaatcgc
taccagtttgataaagtcgggattgtttcctttgtggattatgtggatgagctgggccac
ccctacatgtgggttcagactctgggaggactccattttcccaaagattcttcagagggt
gtgcgtgtgggcagttctctgagtgccagccaaatggagagcaccatgaagctgctgagg
ggacgggtccagtcccgcctggctttgcacaaacaatttgcctctttagagcacagcatt
atccccgtctccagtgagtgtcagcacctctttcctgctaagatcatgtcacgtttagct
cgctggaccaccatcacccacgaagactacatgggtctaccttatacacgtcatgtgact
gatgccggtctggcaaaggagactgatctgtactttatgactgtagtggagcggggcaca
gctcgtctccatgccgctgtggtgctgagtccccgttacccagcagtctctcctcttttc
tccctctgcctcagctggaagggagagcgcagtggacgcactgacgacaacctacgcgcc
atggaaagcgaggtcaatgtgttcaaaagtgaactacagggaccccgtccaggacaccag
ctcctgaccaatcagatttcacgcttgtgcgtctgcctggatgtgtatctggagactgaa
ggtcaagacgacggcgtggagggaccaagagagtttcccagagaaaagatgtgcttgcgc
actgtcaggggtccaaatcgcctgaagcctttcaaatacaatcatcctcagggtttcttc
agtcaccgctaa
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integrated database retrieval system
