Acanthopagrus latus (yellowfin seabream): 119019062
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Entry
119019062 CDS
T08233
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
alat04131
]
119019062 (vps13a)
Membrane trafficking [BR:
alat04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
119019062 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
119019062
NCBI-ProteinID:
XP_036953172
LinkDB
All DBs
Position
5:complement(26510115..26542447)
Genome browser
AA seq
3278 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLTNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKAAEQENPNLEKQDTFVEKLVTQVIKNVQVKISNIHVRYEDDVTNPNCPLSFGVSLK
KLSLQTSDKNWNPSLLDENSRLFFKLVQLDSLFAYWNVNSILFSNHSAEEALRCLQSSMD
IRNSLTISHDFIFRPISADAKLRMNPRSDIDFSSPKVDLMVNLSEVAIELNRPQYISILE
LLGSVDMMSRNLPYRKYRPAVHVHRNARIWWRYVITGILEVDVKPRLHMWSWQHIRHHRQ
MVKRYRELYKTKITSKKPSEELLKALEEREKTLDIFNITLARQQAEVEASKAGLCIYRPG
IKMEEEESQGWLSWMWNWGGEDENKPKEIKSGGFDELLTPAEKAKLYTAIGYSETAANPN
LPKNFEDMKVNFHMERLSVSIKDNKDKNEIIRLTVGELKSTLTQRPGAQAIKLTAQLSLF
EVTGLASDRPAPILLSSRKAATGAGTPLLCILFETNPLDDCANQRLHVESQPLEIIYDAI
TVNSMSAFFMPPDDLQLDELTNATLMKLEQFRDRTATGLMYVIETQKVMDLKVNLMASYV
IIPQTGFYNGTQNIVLLDLGHFQMSSQSKKHLPQLSVGSSNIEDIISRAYDSFDIQLSSL
QFLYSKPDGDWKKARKLKQSPLHILEPVDLKVVFSRAMVVKDSRMAKYKMSGELPLLSLR
ISDDKLRSVLELVESIPLPESRPAAQGAASSSVKPKQFTPQLTPRRPLNLADQRSSLIFE
SCETISITSLGSEEDLFYDAPSSPISEQAFFSDNPMPLRYGDLHKRKSLFKEDAPKNMTD
LVMTFEITEFSVQLCRLSGDEEIPVLHLDIEGLGTELKLRTFDMTSNTYLREICLKCPEY
MDSEEKQVQLITTLDNSEVDLLTLEYIKADKNGPEFKSQHNNTEQLIKVTFSSLDVHLHT
EALLNTMNFLNNLLPPSTKKEGGQEELPTIPEEDEAEAEKEGEKKGEAILTRKKSTKNSK
FADVVNLHIRADLRCLKVFIRGQKARISEISIEGLVSEILMKKKEMEVLANLKNIVILDC
DKDAIYKKAVSIADKEVFSFRMVNFTNATEGDAYLDMSKVDTSVTLTVGCIQVIFLNKFV
SSILAFINNFQEAKEALAEVTVQAAEKAASGVKELAERSTRIALNVHFNAPVIFLPQSSS
SFNVIVADLGLLSVKNSFTKKPFKSDVKIPPVVDIMSVRLTDLKMYRTTYINEGFQGETQ
LLKPVSLDLEILRNLSSNWYHSIPDIEIIAHLKPMSLLLCQDDMIVVLRTLSENLSEKSD
ADPPPARPPTTDPSSDSVSNKESQGSGTTGPASSNTVVTAAVVETQKNSKLKSTLKLDFK
FDSMTLVLYSPNENVIQMMDSHDEQLKLAEFTLGTISTSVHMFSDSSMKASVRLAACLLD
DKRPRIKMVTPRMMAMRPGAEQNMMVEVNYRQGHDGTTLDTVVQDVYLCASMEFLLTVAD
IFLKATQQGFAQAPQPKSSSGGGDKKNINSSVTSKESAAAPAVVSKTEMNVLVRNPEIVF
VADLTRADAPALVMTTHCELQMKSGAEGSQMTAGIKDLKVVACPFLREKRKNNVTTVLQP
CQVFFQSTQESPTSPQAMEVSISALTLKVSPIIINTVITIQSALTPTAETPEELDSPAPV
DLWEKRGWKELKLWFLEEDGDEDTASLAPLIPQGESLQVTIKSICLTLEAGVGHRTMPML
LAKSSFHGDVKNWSTLINLHSELNLEVHYYNEMMGVWEPLLEPLEDDTRDGFRPWTLELK
MKKKPMKYTGLSDEVDYNVPDYKTVIVISSKDQLNITLSKCGLAMLSNLGTAFAEAAKQT
AESFQKDEAPFVVKNRLGLPVSVRHSEMFCPIGQQSTNLTVTLQDGETLGMDYSTTTESD
QFSAMISLSAKDYYIQPTPMGHTSACVIPLIKVGRGMYSVMHKDSGVTRFLVCQIYSVEG
SKYIKIRSPFQIINHFSIPFKVFEGTTYLGTSLPTDEFCVPLDSYRSELSLQPITEDDAD
NQGEQFECSEGFSYEDVSNQQPKTHLQQTCRRRGDEGGVLMVNIVPVKDAVTFKHTGDIG
ENFDVPFVLHLWPSILLRNLLPYPISYTLKDSGVASPEKTLNPGHPAQLHTAVINQSKLD
LRLLNYLAQDWSSEYSLKSDQEEITFIVFQSLRAEDEDDGEGSERRRAELDIAVHVKYDQ
GQTEVAIHSPYWMLNKTGRLLQYKADDIHRKHPLDYDMPLLFSFKPRYFLKNNKVRLMIS
DSELSDDFSLDTVGSHGDVKCKGRYKDYLVGVKIDASSFSLTRIVSFVPFYMLVNRTKNT
VFICEEGQDTWTEAQPEQSAVPFWPENDTKRLKIKVEGCLLPPQTIDFTRPEKCFLLQLD
DSVGGIIVDVNLSEHSATIQFSEYHDGAAPFLIINHTKDQILQFHQSARTETSWVADELL
DLSFSVEEDSSQKEAEQEKLEAGKAVHYTWTEPTGSRELCWKCGSYSGKLKSEEDLRVDM
NNEGKLFVISFYEGLQRVVLFTEDQRIYKMLCESEKAQLAEQEIILSLQNVGVSLINNSS
SQEVSFIGITSSDVVWELKPKKKSRWKTMSTKEAEMLENKFKEYVEVGPVDNAIVDLENN
MQVCFTPNGADMRMLQPCDAPLRRHFLPGVKIEYSVSPRQSAYRVQIHRIQIQNQLPGAI
FPYVFYPVKLPKSITMDAEPKPLTDISIVTRTAGHSDISRIKYFKVLIQEMDLKLDLGFL
YAILDLFTPENASIMNSEQEVELFEKDMEHMMTEMGNVSAADNSPISLYEYFHISPIKLH
LSFSLSTGGEDGLKEKRDTELIPVESLNLLLKSIGATLTDVQDVVFKLAFFELTFQFCTT
QQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSQGVEAFFYEPYQGAIQGPEE
FVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAITMDEEYQQKRRETMNKQPSGLR
EGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMA
SSTFQGIKRAAETSQDIESLRPPRFIHEDGVIRPYKEREGLGSQMLQKIENGRFAKYRYF
AHAKVNDSDFLMITKRGIFFVTKGTFGQLTCEWQYLFEEFTKEPMIVESRRLRIEAKERV
KSVFHAKEFGKIINFKTPEIAKWVLAKLEDARESLPKY
NT seq
9837 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtggacgtcctcaaccgatttttaggggactacgttgtc
aaccttgacagctcccagctaaagcttggcatatggggaggtgatgctgttctaacaaac
cttgaaataaaggaaaatgccttgagtcaactggacattccttttaaagtgagagccggc
catataggacggctggagctaaagattccttggaagaacctctacactcagtcagtggag
gcaacgctggacggtgtctatctgctcatagtccccacagcaagtatcaagtatgacgcc
gaaaaggaggagaagcagctacaggaggctcgtcagagggaactacagcggatagaggag
acaaaactgaaggctgccgagcaagagaaccctaatctggagaagcaggacacgtttgtg
gagaagcttgtcactcaggtcatcaaaaacgtgcaggtcaagatctctaacatccacgta
cgctatgaagatgatgtcactaatccaaactgtcctttgtctttcggagtgtcactgaaa
aagctcagcctccagacatctgacaagaactggaatcccagtcttttggatgagaattcc
aggcttttcttcaagttggttcaactagacagcttatttgcctactggaacgtcaactca
atactcttctccaatcacagtgcagaggaggctttgcgatgtctccagagcagcatggat
atccgcaactctcttactatcagccatgacttcatttttcgtcctatctcagcggacgcg
aaactgcggatgaatcccaggtcagatattgacttctcctctccgaaagtggacttaatg
gtcaatctcagtgaggtggctattgaactcaacagaccccagtacattagcatcctggag
ctgctgggctctgtggatatgatgtcacggaacctgccatacaggaagtacagacctgca
gtccatgttcacaggaatgcccgtatatggtggaggtacgtgatcacgggcatcttggag
gtggatgtgaagccgcgtctccacatgtggtcatggcagcacattcgccaccatcggcag
atggtgaaacgctaccgtgaactgtacaagaccaaaatcaccagtaagaaacccagcgag
gagctgctcaaggcactagaggaacgtgagaagaccttggatatttttaacatcacgttg
gcccgacagcaggctgaggtggaggcgagtaaggcaggcctgtgtatttaccgtccgggg
attaagatggaggaagaggagtctcaggggtggctgagctggatgtggaattggggagga
gaagatgagaacaaacctaaagagatcaagagtggaggttttgatgagttgttaacccct
gctgagaaggcaaaactctacactgccattggatacagtgagaccgctgctaatcccaac
ctgccaaagaattttgaagacatgaaggtcaatttccacatggagaggctgtcagtgtcc
atcaaagacaacaaagacaaaaatgagatcatcaggctgactgtgggagagctcaagtcc
acactcacgcagagacccggagcacaagccatcaaactcacagcccagctcagtttgttc
gaagtcacgggcctggccagtgaccggcctgcaccgatcctcctgtcatccaggaaggca
gccacaggagcagggaccccgctgctttgcatcctgtttgagaccaatccactggatgac
tgtgctaaccagcggcttcatgtggaatcacagcccttggaaatcatctatgatgctata
acagtgaacagcatgtcagcgttcttcatgcctcctgacgacctgcagctggacgagctc
accaacgcgaccctcatgaaactggagcagtttagagaccgcacagccaccggtctaatg
tacgtgattgaaacacagaaagttatggacctgaaggtgaatctgatggcttcctacgtc
atcattccacagaccggcttttacaatggcacccagaacattgtgctcttggatcttgga
catttccagatgtccagtcaaagcaagaagcaccttccacagctgtcagtgggctccagc
aacattgaagacatcatatccagagcatatgacagctttgacatacaactaagcagcctg
cagttcctttatagcaaaccagatggcgactggaaaaaagcccgtaagctgaaacagtca
cctctccacatcctagagccagtcgatctaaaagtggtcttcagcagggcgatggttgtc
aaagactcccgcatggcaaagtacaagatgtctggggagcttcctctgctgtctcttcgt
atatctgatgataaacttcgaagtgttctcgagctggtggagagtatcccactgcctgag
agcagacctgctgcacagggcgctgcttcatcctcagtaaagccaaaacagttcacccca
cagctcactcccagaagacctctaaacttggctgaccaacgttcctctctcattttcgag
tcttgtgagaccatcagcatcacctcattgggatcagaggaagatttgttttacgatgct
cctagctctcccattagcgaacaagccttcttttcggataatcccatgccgctgcggtac
ggagacctacacaaaagaaaaagtctgttcaaggaggacgctccaaagaacatgactgac
cttgtcatgacgtttgaaatcactgagttttcagttcagttgtgtcgtctctctggagat
gaggagatcccagtgctccacttggacatagagggtctgggcactgaactgaaactgcgc
acctttgacatgacatctaacacctacctacgagagatctgcctcaagtgtcctgaatac
atggattctgaagagaagcaggttcagctgatcaccactctagataactcagaggttgac
ctgctcaccctggaatacattaaagctgataagaacggtcctgaattcaagtcccaacac
aacaatacagagcagctcatcaaggtgaccttctcatccctggatgtccatcttcataca
gaggctctgctcaacaccatgaacttcctcaacaacctccttcctccatccactaagaag
gagggagggcaggaggagctccccaccatccccgaggaggacgaggcagaggcagaaaag
gagggagagaagaaaggcgaagctattttaaccaggaaaaaaagtacaaagaattcaaag
tttgcagatgtggtgaatcttcatatcagagctgatctgcgctgtctgaaagttttcatc
cgaggacagaaagccaggatttctgagattagtattgaaggtctggtttctgagattctg
atgaaaaagaaggagatggaggttctggccaacttgaagaacattgtgatcctggactgt
gacaaagatgcgatttacaagaaggctgtgtctatagcagataaggaggtgttttccttc
cgcatggtgaattttacaaatgcaacagaaggagacgcctatctggacatgtctaaagtt
gacacctctgtcacactgactgtgggatgcatccaagtcatcttcctcaacaagtttgtc
tcctccattctggcattcatcaataacttccaggaggctaaagaggccctggcagaggtg
acagtccaggctgcggaaaaggcagcgtcaggtgtgaaggagctggcagagcggagcact
cgaatcgctctgaacgtccactttaatgcacccgtcatcttcctgccccagtcgtcctct
tccttcaatgtcattgtcgctgacctcggtctgctgtctgtcaagaacagcttcaccaag
aagccctttaaaagtgatgtcaagatcccgcctgttgtggatataatgtctgtgagactg
accgacctcaagatgtacaggaccacatacataaatgaaggttttcagggagagacccag
ctgctgaaaccggtcagcctggacttggaaatcctgagaaatctttcatccaactggtac
cacagcatacctgacatagagatcattgctcatcttaagcccatgagtctgcttctctgc
caggatgacatgatagtggtcctgaggactctgagtgagaacctgtcagagaagtcagac
gcagaccctcctccagctcgtccacccaccactgacccctcctctgactctgtatctaac
aaagaatcacaaggttctggaaccactggaccagccagcagtaacacagtagtgacagct
gcagttgtggagacccagaaaaacagcaagctgaagagcacgctcaaactggacttcaag
ttcgactcaatgacgctggtcttatatagtcctaatgagaatgtgatacagatgatggat
tcacatgatgagcagctgaagttagcagagttcactctgggcaccatctccacctccgta
cacatgttctccgacagctccatgaaggcctcagtgcgactggctgcctgcctccttgat
gacaagagacccagaatcaagatggtcacgccaaggatgatggcaatgcgtcctggtgca
gaacagaacatgatggtggaggtaaactaccgtcaaggccatgatggcaccactttggac
acagtggtgcaggatgtgtacctgtgtgccagcatggagttcctgctcaccgtggcagat
atcttcctcaaagccactcagcaaggttttgctcaagccccacaaccaaagagcagttca
ggaggaggcgataaaaagaacattaactcgtctgtcacatcaaaggagtcagctgcagct
ccagcagtggtatcaaaaacagagatgaacgttctggtgcgtaacccagagatcgtgttt
gtggccgacctgacgcgtgctgacgccccggccctggtgatgaccacacactgtgaacta
cagatgaaaagtggagcagagggatcacagatgactgctggtatcaaagacctcaaggtc
gtggcttgtcccttcttgagagagaagaggaaaaacaacgtgaccacagtgctgcaacct
tgtcaggtgttcttccagagtactcaagagtccccaacatcccctcaggctatggaggtc
tccatcagtgctctcaccctgaaggtatctccaatcatcatcaacacggtgatcaccata
cagtcagcactgacacccacagcagagacccccgaggagctggatagtcctgctcctgtg
gacttatgggagaaacggggctggaaggagctcaaactctggttcctagaagaggatggg
gatgaagacacagcatctctggccccattgataccacagggagagtcactacaggtgacc
atcaaatccatctgtctgactctggaggctggagtgggacaccgcacgatgcccatgctt
ctggccaagtcctccttccatggcgatgtgaaaaactggtccacacttattaacttacac
agcgagctcaacctcgaggtacactattacaatgagatgatgggagtgtgggaaccactg
ctggagcccttagaagacgatacaagagatggtttcagaccgtggacgcttgaactgaag
atgaagaagaaaccaatgaagtacacagggctgtcagatgaagtggattacaatgtccca
gactataagacagtcattgtcatcagcagtaaagaccagctcaacatcaccctctccaaa
tgtggactggccatgttgagtaacctgggcacggcatttgcagaggctgctaaacagaca
gctgaatctttccagaaggatgaagctccgtttgtggtgaagaaccgcctgggcctgccg
gtgtccgtccgccacagtgagatgttctgtcccatcggtcagcagagcaccaacctcact
gtgacgctgcaggatggggaaaccctcgggatggactattcaaccacaacggagtctgat
cagttctcagccatgatctctctgagtgcgaaggactactacatacagcctactccgatg
ggccacacctcggcctgtgtgatccccctgatcaaggtgggcagaggaatgtacagtgta
atgcacaaagactcaggagtcactcggttcctggtctgccagatttactctgtggagggc
agcaagtacatcaagatccgctctcctttccagatcatcaatcatttctcaatcccattc
aaagtttttgaaggaacaacatatctgggtacatctcttcccactgatgagttctgtgtg
cctctggattcatataggtccgagttgagccttcagccgataacagaggatgacgcagac
aatcagggggagcagtttgaatgctcagagggcttcagttacgaggacgtcagcaaccag
cagcccaagacacacctccagcagacctgccgtcgccgtggagatgagggtggtgtgctg
atggtcaacattgtgccagtaaaagatgcagtgacattcaaacacactggagacattggg
gagaacttcgacgtgcccttcgtgctgcacctgtggccttcgatcctgctgcgcaacctg
ctgccttaccccatctcctacacactgaaggacagtggagtcgcttcccctgagaaaact
ctgaaccctggccaccctgcccagcttcacactgcagtcatcaaccaatcaaaacttgat
ctccgcctactgaactacttggctcaggactggtcctctgagtacagtctcaaaagtgac
caggaagaaatcaccttcatagtgttccagtctctacgagctgaggatgaagatgatggt
gaagggtctgagcgcaggagggctgagctggacatagcagtgcatgttaaatacgaccag
ggacaaacggaggttgctatccattctccgtactggatgctgaacaagacaggcaggttg
ctgcagtacaaagctgatgatatccaccgcaaacaccctctggattatgacatgcccctg
ctcttctccttcaagccccgatacttcctgaaaaacaacaaggttcgtcttatgatctca
gacagcgaactctctgatgatttctccctggacacagttggaagccatggagatgtcaaa
tgtaaaggccgatacaaagattacctggttggtgtgaagattgacgcgagcagtttcagt
ctgacccgcatcgtgagcttcgtgccgttttacatgctggtgaacagaaccaagaacacg
gtcttcatatgtgaagaggggcaagacacctggacggaggctcagccggagcagtcagcg
gttcccttctggcctgagaacgacaccaagaggctaaagatcaaagtagaaggctgttta
ttgcctcctcagactattgacttcacacgaccagaaaaatgctttttgctgcaactggac
gactctgtgggtgggatcattgtggatgtgaacctgtcagaacactccgccacaatccaa
ttctctgagtaccacgacggcgctgctccgtttctcatcatcaaccacacaaaagaccag
attctgcagttccatcagagcgcccggacagaaacctcgtgggtggctgacgagctgctc
gacctctccttctcagtggaggaggacagctcacagaaggaggcggagcaggagaagctg
gaggctgggaaagctgtgcactacacctggactgaacctactgggtcccgagagctttgc
tggaaatgtggttcttacagtgggaagctgaagagtgaggaggacttgcgggtggacatg
aacaatgagggaaaactgtttgtgatctccttttatgaaggtctccagcgtgttgtactg
ttcactgaggatcagcgaatctacaagatgctctgtgagagcgagaaggcgcagttggct
gaacaggaaataatcctgtcactacagaacgtgggagtgtctctcatcaacaacagcagc
agccaggaggtctccttcattgggattacaagctctgatgtggtgtgggaattgaagccg
aagaagaagagccgatggaagactatgagcactaaagaagctgagatgctggagaacaaa
tttaaagagtacgttgaagtcggacccgtggacaacgccatcgtcgacctggagaacaac
atgcaggtgtgctttactcccaacggtgcagacatgcggatgcttcagccgtgtgacgct
cctctcaggaggcacttcctgcctggagtaaagattgagtacagcgtctcaccccgacag
agcgcctaccgtgtccaaatccaccgcattcagatccagaatcagctgccaggagcgatc
ttcccttatgttttttaccctgtaaaactgccaaaatctatcaccatggatgcagaaccc
aaaccgctcactgatatcagcatcgtcaccagaacagcagggcactctgacatttctcgc
atcaagtacttcaaggtgttgattcaagagatggatctgaagctcgatctgggcttcctg
tacgccatcctggacctgttcacacctgagaatgccagcatcatgaactcggaacaggag
gtggagctgtttgagaaggacatggagcatatgatgacagaaatgggcaatgtctctgct
gctgacaactctcctatcagcctgtatgagtacttccacatctcccccatcaagctgcac
ctgagtttctctctgagcaccggaggagaagacggcctgaaagagaagagagacacggag
ctcattcctgtcgagtccctcaacctgctgctgaagagcatcggtgcaacactcactgat
gtgcaggacgttgtcttcaaactggccttctttgagttgaccttccagttttgtaccact
cagcagctgcagtgggaggtcatcagacattattccaagcaggctatcaaacagatgtat
gtgctggtgctcggcctggatgtgcttggaaatccttttggactgatcagaggactgtca
cagggagtggaggccttcttttatgagccttatcagggagccatccaggggccggaggag
tttgtcgaagggatggctcttggtgtgaaggctctggtgggaggagctgtaggtggaata
gcaggtgcagcctcccggatcacaggtgcgatggcaaagggtgttgctgccataacgatg
gacgaggagtaccagcagaagagacgagagactatgaacaaacagcccagcggcctgaga
gaggggctgaccaggggtggaaagggattagtgtctggatttgtcagtgggatcacaggg
attgtcaccaaacctattaaaggagcccagaaggagggtgcagcgggctttttcaaaggt
gttggcaaaggtctggttggcgctgtagccagacctactggaggcattattgacatggcc
agcagtacttttcaagggatcaagagggcagcggagacttcacaagatattgaatctctc
cgtcctccacgcttcatccacgaggatggtgtcatacgaccatataaggagagggaaggc
ctcggcagtcagatgctccagaaaattgagaatggacgttttgccaagtacagatacttt
gctcatgccaaggtcaatgactccgacttcctgatgatcaccaagagggggatattcttt
gttaccaaaggcacatttggccagctgacctgcgagtggcagtatctgtttgaagagttc
actaaggagccgatgatcgtagagagccgccgacttcgcattgaggccaaggagagagta
aagtctgtcttccatgccaaggagtttgggaagattataaacttcaaaactcctgagata
gccaagtgggttcttgccaaattggaggacgcaagagagagtttacctaaatactga
DBGET
integrated database retrieval system
