Acanthopagrus latus (yellowfin seabream): 119019234
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Entry
119019234 CDS
T08233
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119019234 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alat03021
]
119019234 (smarca2)
03036 Chromosome and associated proteins [BR:
alat03036
]
119019234 (smarca2)
Transcription machinery [BR:
alat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119019234 (smarca2)
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
119019234 (smarca2)
Chromatin remodeling factors
BAF complex
119019234 (smarca2)
PBAF complex
119019234 (smarca2)
GBAF(ncBAF) complex
119019234 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
119019234
NCBI-ProteinID:
XP_036953529
LinkDB
All DBs
Position
5:complement(16492437..16540794)
Genome browser
AA seq
1590 aa
AA seq
DB search
MTTPSDTSGGMSHPGPSPGAGLSPGPILGPSPGPDPSPGSVHSMMGPSPGPGTPNAPHGM
QGQSDYSQDGMYPMHKTMEGMNDKTMADAMHFGHMKGVGMRSLHSGMGPPQSPMDQHSQG
YMSPHPSPMGVHEHASSPMSGGGGGGGPTPPHMPPSQSGPMMPMDPQGAMPSMSTMGQQG
RGPSAFSPVQLQQLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQQQQQQQQQQQ
PQQQAPGASPYNRPAGMPMAPMGGPQSSPCPTPAMQGHNQSAGPKPWSDGQGGENQANAQ
KHLTPAVSGRPSPAPPQASTVPAGPMPGSSVTPQPPGQQVSPMLQMQQKQNRVTPVQKPQ
GLDPVGILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQD
VVACMRRDTTLETALNSKAYRRSKRQTLREARMTEKLEKQQKLEQEKKRRQKHQEYLNSI
LQHAKDFKEYHRSVSGKTQKLTRAVANWHTNTEREQKKETERIEKERMRRLMAEDEEGYR
KLIDQKKDKRLAYLLQQTDEYVANLTTLVYEHKAAQAAKEKKKKKKRKKKVDGDGEGTSA
IGPDGEPMDESSQMSELPVKVIQTETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSE
ESGSEFEEEEEDEVAKAETEEKIIGPNGDRVNVTAAKHIIESAKQDVDDEYSVPTGQTSS
ASYYGVAHAVIERVEKQSSLLINGTLKHYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQ
TIALITYLMEHKRLNGPFLIIVPLSTLSNWVYELDKWAPSVVKIAYKGTPALRRGFVPQL
RSGKFNVLLTTYEYIIKDKQILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLL
LTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRL
HKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQKGILLTDGSEKDKKGK
GGAKALMNTIMQLKKICNHPYMFQHIEESFAEHLGYPNGIISGHDLYRASGKFELLDRIL
PKLQATNHRVLLFCQMTTLMTIMEDYFSYRNFLYLRLDGTTKSEDRATLLKKFNEEGSQY
FIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNS
VEEKILAAAKYKLNVDQKVIQAGMFDQKSSGHERRVFLQAILEHEEQNEEEDEVPDDETL
NQMIARNEDEFELFMRMDMDRRREHARNPKRKPRLMEEDELPSWIIKDDAEVERLTYEEE
EEKMFGRGSRCRRDVDYSDALTEKQWLRAIEDGNLEEMEEEIRLKKRKRKRRQDKDSSSR
DEGSSKAKKRRGRPPAEKLSPNPPKLTKQMNTIIDTVINYRDGSGRQLSEVFVQLPSRKE
LPEYYELIRKPVDFKKIKERVRNHKYRSVGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVL
QSVFKSARQKIVKDEESDDESDEDDEDDDESETEAKSVRVKIKLSKEARSHDKGKKRQSR
GKAKPVVSDDDSDEEQDDNDQSDKSKSDDD
NT seq
4773 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccccttcagatacctcaggtggtatgtcccatcctggcccttctccgggggca
ggtctatcaccagggcccatcttgggccccagccctggaccagacccctcaccaggctct
gttcacagtatgatgggacccagccctggacctggaacacccaacgcacctcacggcatg
cagggacaaagtgattactctcaggatggcatgtatccaatgcacaagaccatggagggg
atgaatgacaagaccatggcagatgcgatgcactttggccatatgaaaggtgtggggatg
aggtccctgcatagtggtatggggcctccgcagagtcctatggaccaacatagccaagga
tacatgtccccccatccgtcccccatgggtgtccatgagcacgcctctagtcccatgtca
ggaggtggaggtggtgggggacccacaccaccccacatgcctccctcccagtcaggtcct
atgatgcccatggatccccaaggagccatgcccagtatgtccaccatgggccagcagggg
cggggaccatctgctttcagtccggtccaactgcagcagctcagagctcagatcctggcc
tacaagattctggggcgtgggcaacccctgcctgaaaacctccagttggctgttcagggc
aagaggagcttacccacaatgcaacagcagcagcagcagcagcagcaacaacaacagcag
ccacagcagcaggcacctggtgctagtccttacaaccggcctgcaggtatgccaatggca
cctatgggtggtccccagtcaagtccttgccctacaccagccatgcaaggtcacaatcaa
agtgcaggacccaagccttggtctgatggtcagggtggtgaaaatcaagccaatgctcag
aagcacctcaccccagctgttagtggacgcccatctcctgcaccacctcaggcctccact
gtgccagctggacccatgccaggcagctcggtgactcctcagcctcccgggcagcaggtg
tctcccatgctccagatgcagcagaaacagaaccgcgtcacaccagtccagaagcctcag
ggcttggacccagttgggatcctgcaagagcgagagtacagattgcaggctcggattgca
caccgaatccaggaactggaaagtttgccaggctctctgccccccgacctgaggactaaa
gctacagttgagctcaaagcactacgcctactcaactttcagcggcagctaaggcaagac
gtggtggcatgtatgaggcgagatacaacactggagacggccctcaactctaaggcttac
agacgtagcaagcggcagacgctgagggaggcacgtatgacggagaagctggagaaacag
cagaagctggagcaggagaagaagcgcagacagaaacatcaggaatatctcaatagtatc
cttcagcatgctaaagacttcaaagaatatcaccgctcagtgtccggtaaaacccagaaa
ctcaccagagctgtcgctaactggcacaccaacacagagcgggaacagaagaaagagact
gagagaatcgagaaagagaggatgagaagacttatggcagaagatgaagaaggctatcga
aaactaattgaccagaagaaagacaagcgactggcctacttgctgcagcagactgatgag
tatgtggccaacctcaccaccctggtgtacgaacacaaagctgctcaagctgccaaggag
aagaagaagaagaaaaaacgaaagaagaaggtggatggagatggtgaaggcaccagtgcc
attggacctgatggagagcccatggatgagagcagccaaatgagtgagctgccagtcaaa
gtgattcagaccgagactgggaaagttttgcagggaacggatgctccaaaatccagccag
ctggaggcctggctcgaaatgaaccctgggtatgaagtggcaccgcggtcagacagcgag
gagagcggctcagagtttgaagaggaggaggaagacgaggtggctaaggcagaaacggag
gagaagataattggtccaaatggagacagagtgaatgtgacggctgccaagcacatcatc
gagtcagccaagcaggatgtggatgatgagtacagtgttcccactggacaaaccagctct
gcatcttattatggagtggcccacgctgtcatagagagggtggagaaacagtcatctctg
ctgatcaacggcacactcaaacattaccagatccaggggctggagtggatggtgtccctg
tacaacaacaatctaaacggcatcctggctgatgaaatgggtctcggtaaaaccatccag
accatcgctcttatcacctacctgatggagcacaagaggctcaatggtccctttctcatc
attgttcctctctctactttgtccaactgggtctatgaacttgacaagtgggcaccctct
gtggtcaaaattgcttacaagggcacccctgctttgcgccgtgggtttgtgcctcaactc
cgcagcgggaagttcaatgtcttgctgaccacctatgaatacattatcaaggacaagcaa
atactggccaagattcgttggaagtacatgatagtggacgaggggcaccgcatgaagaac
catcactgtaagctgacccaggtgttgaacacccactatgtggctccccgccgccttctc
cttactggtacaccgctgcagaataagctgcctgagctgtgggccctgctcaacttcctc
ctgcccaccatctttaagagctgcagcactttcgagcagtggttcaacgcccctttcgcc
atgacaggagagagggtcgacctgaatgaggaggagaccatcctgataattcggcgtttg
cataaggtgctccgccccttcctcctacgcagactgaagaaagaggtggagtctcagctg
ccagagaaggtggagtatgtcattaaatgtgacatgtctgctatacagaaggttctgtac
cgccacatgcagaaaggcatcctcctcactgatggctcagagaaagacaagaagggcaaa
ggaggagcaaaggccctgatgaacaccatcatgcagctgaaaaagatctgcaaccaccca
tacatgttccagcacattgaggaatcttttgctgagcacttgggctatccaaacggcatc
atcagtgggcatgatctgtatcgagcttctgggaagtttgaactcttagatcgcatcttg
ccgaagctacaggccaccaaccacagagtcctgctcttctgccaaatgaccacactcatg
acaatcatggaggactacttcagctaccgcaactttctctatctacgtctcgacggaacc
accaagtctgaggatcgagcgacgctgttgaagaagtttaatgaggaaggatctcagtac
ttcatcttcctgctcagtaccagagctggtggcctcggcctcaacctgcaggctgccgac
actgtcgtcatctttgacagtgactggaacccacaccaggaccttcaggctcaggaccgg
gcacaccgcatcggtcaacagaatgaggtgcgtgtgcttcgtctctgcaccgtcaacagt
gtggaggagaaaatcctggcagctgccaaatacaaactcaatgtggatcagaaggtcatc
caggcaggcatgttcgaccagaagtcctcgggccatgagcgccgtgtctttcttcaggcc
attttggagcatgaggagcagaatgaggaagaagatgaagtacctgatgatgaaaccctt
aaccagatgatagccagaaatgaagatgaatttgagctcttcatgcgcatggacatggac
agacgccgtgagcatgccaggaacccaaagcgtaagccccgtctcatggaggaggacgag
ttgccatcttggatcatcaaagatgacgctgaggtagaacggctgacgtatgaagaggag
gaggagaagatgttcggccgaggatcgcgctgccgccgggatgtggactatagtgatgcg
ctgaccgaaaaacagtggctacgggccattgaggatggaaacttggaagagatggaggag
gagatccggctgaaaaagcgcaaacgcaagagacgtcaggacaaggactcgtcgagcaga
gatgaggggagctccaaggccaagaagagacgtgggcgtccaccagctgagaaactctct
ccgaacccccccaagctcaccaagcaaatgaacaccatcatcgatacagtcattaattac
agagatgggtcaggaagacaattaagtgaggtcttcgttcagttaccatccaggaaggag
ctcccagaatattatgagctaatcagaaaacctgtggacttcaaaaagatcaaggaacgt
gtgagaaaccataaatacaggagtgtgggcgacctggagaaggatgtgatgctgctttgt
cacaatgcccagaccttcaacttggagggatcccagatatatgaggattccattgtcctt
cagtctgtgtttaagagtgcccggcagaagatagtcaaggacgaagaaagtgatgatgaa
agcgatgaggatgatgaggacgacgatgagtccgagactgaggctaagtctgtgcgtgtt
aagattaagctcagtaaggaagcacgtagccatgacaaaggcaagaagagacaaagccga
ggaaaggccaagccggtggtcagcgacgacgacagcgacgaagaacaggatgacaatgat
cagtcagacaagagcaagagtgatgatgactga
DBGET
integrated database retrieval system
