Acanthopagrus latus (yellowfin seabream): 119019965
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Entry
119019965 CDS
T08233
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03420
Nucleotide excision repair
alat04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119019965 (ercc8)
09124 Replication and repair
03420 Nucleotide excision repair
119019965 (ercc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
alat04121
]
119019965 (ercc8)
03400 DNA repair and recombination proteins [BR:
alat03400
]
119019965 (ercc8)
Ubiquitin system [BR:
alat04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
119019965 (ercc8)
DNA repair and recombination proteins [BR:
alat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
119019965 (ercc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WDR55
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
NBCH_WD40
ANAPC4_WD40
WD_LRWD1
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
119019965
NCBI-ProteinID:
XP_036954870
LinkDB
All DBs
Position
5:24098999..24110484
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AA seq
406 aa
AA seq
DB search
MGIEAMLGFLTARQAGLDDPLRLRRAESTRRVLSLTLNPDRDVDRVHGNGINAIDIDAVE
GRYMLSGGADGVIVVYDLENFNGKPQYTCKAVCTVGRSSRHVHKFSVETVQWYPYDTGMF
VSSSFDKTMKVWDTETLKPAEVFEFEGNVYSHHLSPIARKHSLIAVGTKNPKIQLCDLKS
GSRIHVLQGHRAEVLAVRWSPRYEHILATASADSKVKVWDVRRASGSLLTLDQHNGDKSK
ASSEAVNTAHNGRVNGLCFTGDGLHLLTTGTDDRMRLWNSATGENTLVNYGKVCNESRKR
LQFTVSRGCSPEFVFVPCGSSVAVYALHTGELVTMLRGHYNNVDCCEFHTDYQELYSGGK
DCNILAWVPILRTADVEEESNSAPARAVGQASVNPAFQDAWSSDED
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggggattgaagcaatgctgggttttttgacagcaaggcaggctggtctggatgaccct
ctgcgacttagacgtgcagagtcaacgagaagggtcctcagtttgacgctgaatcctgac
agagatgtggacagagtccatggaaatggcatcaatgccattgacattgatgcagtagag
ggcagatacatgttgtctggtggagcagacggagtaatcgtcgtctatgacctggagaac
ttcaatgggaaaccacagtacacctgcaaggcagtttgcacagttggcaggtcaagtcga
catgtgcacaaattcagtgtggagacagtccagtggtatccttatgacactggcatgttt
gtctccagttcctttgacaagaccatgaaagtctgggacactgagacactgaagcctgct
gaagtctttgagtttgagggcaatgtctacagccaccacctgtcccccatcgcaaggaag
cacagtctcattgcagttggcaccaaaaaccctaaaatccagctgtgcgacctgaagtct
ggttcacggattcatgttcttcagggtcacagagcagaggtcctggcggtgcgttggtcg
cccagatacgaacacatcttagccactgccagtgcagacagcaaagtgaaagtatgggat
gtgcgtcgggcttctggtagtctcctcactctggaccagcataatggagacaagtcaaaa
gcctcttctgaggcagtgaacacagctcataacggcagagtgaatggcctgtgctttacc
ggtgatggcctccacctcctcacaactggaactgatgaccgtatgagactatggaatagt
gccactggggaaaacacactggtaaattacgggaaggtctgcaacgagagtcgtaaaagg
ctccagttcacagtgtcccgtggctgcagcccggagtttgtgtttgtgccatgcggcagc
tcagtcgctgtgtatgccctccacacaggagaactggtcacgatgctcaggggccactac
aacaacgtcgactgctgcgagtttcacacagactaccaggagctgtatagtggaggtaaa
gactgtaacatcctggcgtgggttcctatccttcgcaccgcagatgtggaagaagagtcg
aacagcgcaccagcgagagctgtgggccaggcttcggtgaaccctgcctttcaggatgca
tggagcagcgatgaagattaa
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