Acanthopagrus latus (yellowfin seabream): 119020204
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Entry
119020204 CDS
T08233
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119020204 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119020204 (lsm1)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119020204 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
119020204 (lsm1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
119020204
NCBI-ProteinID:
XP_036955331
LinkDB
All DBs
Position
5:complement(6082311..6086694)
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AA seq
133 aa
AA seq
DB search
MNYVPGTASLIDDIDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDVDKPCDTLLQQVSIEEILEEQRLQQQAKQETEKVKMQVLKDR
GLSIPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgtaccagggacggcaagcctcattgacgacatcgacaagaaacatctggtg
ctgctccgagatggcagaacactgatcggttacctcagaagcattgatcagttcgccaat
ttagttttccaccagacagttgagcgcatccacgtggggaagaaattcggagacatcccc
agaggaatattcattgtgaggggggagaatgtggtgctgctcggagagatagatgtggat
aagccctgcgacacactcctgcagcaggtctccatcgaagagatcctggaggagcagcgg
ttgcagcagcaagccaaacaggagacggagaaagtcaaaatgcaggtcctgaaggaccga
ggcctgtccatccccaaagctgataacttagacgaatactaa
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