Acanthopagrus latus (yellowfin seabream): 119020220
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Entry
119020220 CDS
T08233
Symbol
cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119020220 (cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119020220 (cnot6l)
Enzymes [BR:
alat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119020220 (cnot6l)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119020220 (cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119020220 (cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
LRR_9
type_II_gspD_N0
Motif
Other DBs
NCBI-GeneID:
119020220
NCBI-ProteinID:
XP_036955363
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All DBs
Position
5:complement(14728529..14747630)
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AA seq
553 aa
AA seq
DB search
MPKEKYDPPDPRRCYTIMSAEDAANGKKSYWAELEISGRVRSLSSSLWTLTHLTALHIND
NNLTRIPPDIAKLPNLVYLNLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWITLKERDQMTS
TAVFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITSCDADIISLQEVETEQ
YYTMFLETLKERGYDGYFCPKSRAKLVSEQERKHVDGCAVFFKTEKFTLVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVNKDMFSGGMKPSQERQLILVANAHMHWDPEY
SDVKLIQTMMFLSELKSIAERASGSVATGSPTSDPSSIPIVLCADLNSLPDSGVVEFLSD
GGVAENHKDFKELRYNECLTNFNCNGKNGNSDGSITHSFQLKSAYDSNLMPYTNYTYDFK
GVIDYIFFSKTHMSVLGLMGPLDSQWLIDNNITGCPHPHIPSDHFSLLAQLELQPPLPHP
LNPLNGLHLPVHR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagatccccgtagatgttacaccatcatgtcagcc
gaggatgcggccaatgggaagaagtcttactgggccgagctcgagatatctggacgagtg
aggagtctgagcagctcattatggacactcacccacctgacagcgctgcacatcaacgac
aacaacctgacccgcatcccaccggacatcgccaagctgcccaacctggtctacctgaat
ctatcgtccaataaactccgcagtctgcctgccgaactgggcaacatggtctctctcagg
gaattgcttttaaacaacaatcttttacgagttctgccttatgaacttgggaggcttttc
cagttacaaaccctggggcttaaaggaaaccctttgtcccaagatatcctcaatctgtac
caggagccggacggaaccagaaagcttttgaactacatgctcgacaatctagcagtgcac
ccagagcagctcccccaaagaccttggatcactctgaaagagcgagaccaaatgacttcc
acagccgtgttcacggtcatgtgctacaacgtgctttgtgacaaatacgccacgcggcag
ctgtacggctactgcccatcctgggccctcaactgggagtaccggaagaaaggcatcatg
gaggaaatcaccagctgtgacgctgacatcatcagcctgcaggaagtggagacggagcag
tactacactatgtttctggaaacactaaaggaacgcggctacgatggctacttctgtcca
aagtctcgtgccaagctggtttctgaacaggagaggaaacacgtggatggctgtgctgtg
tttttcaagaccgagaagtttactttggtccagaaacacactgtggagttcaaccaggtg
gccatggccaactctgagggctcagaggtcatgctgaacagagtgatgaccaaagacaac
atcggagtggctgttcttctcgaagtcaacaaggacatgttctctggtggcatgaagcca
tcacaggagaggcagctgatcctggttgccaacgctcacatgcactgggaccccgagtac
tcggacgtcaagttgatccaaactatgatgtttctgtcggagctgaagagcatcgctgag
agggcctcaggctccgtggcaaccggttcaccgacctccgacccgtcctccatccccatc
gtcctgtgtgctgacctcaactcactgcccgactctggtgtggtagaattcctgagcgat
ggaggagtagccgagaaccacaaggacttcaaggaactccgctacaatgaatgtctgacc
aacttcaactgcaacggcaagaacggcaattcggatggaagcatcacacacagcttccag
ctgaagagcgcctacgacagcaatctgatgccttacacaaactacacatatgacttcaag
ggtgtgatcgactacatcttcttctccaaaacccatatgagtgtcctgggcctgatggga
ccgctggacagccagtggctcatcgacaacaacatcacaggctgcccccatccccacatc
ccctcggaccacttctccctgctggcccagctggagctgcagccccccctgccccacccg
ctcaaccccctcaacgggctgcacctgcctgtccacaggtag
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