Acanthopagrus latus (yellowfin seabream): 119021351
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Entry
119021351 CDS
T08233
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119021351 (col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Kunitz_BPTI
VWA_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
fn3_2
Motif
Other DBs
NCBI-GeneID:
119021351
NCBI-ProteinID:
XP_036957488
LinkDB
All DBs
Position
6:17765987..17834842
Genome browser
AA seq
3105 aa
AA seq
DB search
MKALKLCCGSVRLRQVVKMWSWVFTVAVLLSSMKQAEAQGRCNNVQAADIVFLVDGSSSI
GRANFLQVKGFMAGIIKPFASSVSESGIRFGAIQYSDTSRVEFTFPTYLNGTELVNAVQN
LNYKGGNTRTGAGLKFVADNFFNPSSSRDVPKITILITDGKSQDSVQDPAQKLRSQGVHI
FAVGVKSADRNELAQISSQPSSDFTSFVGDFKLLNTLLPLVSPRVCSKAGGVYASDEAFS
GPTNIQFTGQTSDSLRFRWSQAGGPVSGYVVQYVPLSGLGQPITAELRQETVSASQRTFT
ARELRSGTDYLVTVIAQYPNSVGDSVSAKQRTRSLPGVSSLRLIQAGFFSLSVGWDQPSS
PVQGYKITYGPRGQPAAQLLEQSLSADSTSVSLESLQPDTEYVISLYPLFPRNSASPSIL
NARTLRLEAVQQLAVETVSEGSVRVRWRGVSGARAYRLVWGPFTGRNVETVEVAGDSEFH
TLSSLLSDTEYIVTIIPLYEGNTEGPVATARFKIERQEQQVLRAATTGPSSIRLTWRIIQ
SSRGYRLQWSEGEGGRVQSLSFPRSTSSHELTGLQPNTEYIITLFTLYDGREEATPVSTA
SREEQPVGSVSNLRVVESLGSTVRLGWTGVAGATQYRIIILNTEAGTEEIRSIPGNQTTL
DLRDLTVGVSYVVTVTALVGTNEGDPVTVSIKPEQGAGRVTNLRVTNANSRRIRIAWTGV
SGATGYRVTWRQGSSAEQSRLLGAEATAYTIDSLRPDEALVIGVAAVVDQRVGEVVTLSS
RTNPHGGSVSGLRIVDVTSQRIRITWSPSTRATGYKITWRRDDGVESTRNVPAEVSSFTI
DGLQSDSAYTLLVSSLTGSREGSPATLVIRTESDRTVIGTVTSLQVQETRGEVVRVTWVG
VQGATAYRVSWRRTDGGEERSQVVGGDVTAVDLDQLDPGAQYEVQVMALVQNREGTPVSV
RVTTPGVFTPAPTVLATTLQVAEITQSSVRLGWNPLPGATGYILRWRDETDVGRGLSVTL
PAASSSYQVTGLRLGRRYRFTVQPTFTSGVGRESSVDERTVCVGGRLDVVFLVPASTDRV
NLARPLRELLTSAAGSLNTIGPRDSQVGVVVYGYRPKIWFLLNRHGRSDTLLQEIQSTPF
DESPGNNIGEAVTFTTQYLLSPAAGRRPRVPGAVVIIADKKSADNLTLAASRLRATGVTV
LALGMEQADTEELRRVVTDGSIQNILYARDAAQLDTLHTDLADMLCGLARIPEDPGSGCT
ICPQGEKGDRGDRGERGRDGADGRKGEPGRDGLPGREGPRGPEGRPGQPGQIIPIDPTGG
VKGEKGERGFPGIDGSPGLPGRPGSPGNAGVPGSQGLPGIRGDPGEPGVAGPQGPKGGKG
ERGEPGSSGPGGGFPGRKGEPGIPGIPGTPGRPGSDGAKGAPGVPGTPGQDGRPGLAGTP
GPSIKGEKGSPGERGPPGVGSGVAVKGEKGSPGALGTPGAQGPRGLTGPQGSKGDKGEGA
DGPPGPPGRQGEPGDRGPRGPPGEIGSKGDRGQPGEPGSQGDRGERGPTGESGERGDPGK
PGLAGTPGLRGLPGPSGPPGEKGNEGARGEPGRSASGLPGKKGDQGERGLPGSEGSKGDR
GEQGPRGEKGSSGSGGSAVPGPKGEPGERGLSGISGRPGAKGDTGEPGERGENGRPGIPG
KPGLAGKEGPSGEKGDEGTPGESGLPGKPGERGLRGLAGQPGRPGEKGDMGDPGESGRNG
SPGPAGLRGEKGEVGPQGPPGPPGKVADIQGQLKGDKGERGEDGDPGEHGSKGQKGEAGG
PGAPGLRGSEGQRGPAGTRGDSGERGAPGEKGERGASGLDGRPGVDGKPGTSGPPGQRGD
PGKQGDPGRDGLSGLRGEQGPPGPVGPPGTPGTPGKAGEDGKPGAPGKMGEDGVPGEDGR
KGDKGEAGAAGRDGRDGLKGDRGPTGPVGPTGLQGPPGPAGPVGPPGQVVYVKGAPAASI
PGPQGPPGTPGVPGTPGAAGARGERGPAGPRGEAGDPGEDGAPGKPGTAVDVQKALANLG
IQVSDLKVVVDRKDVPVITTVQQAEKGAKGDRGESGARGPPGLDGARGVPGERGAKGDQG
DRGPIGAPGPPGRAIGERGPEGPPGPAGEPGKPGIPGVPGRAGELGEVGRPGEKGAHGEK
GDKGESGKTGLTGPAGPPGQKGASADAVLAGTPGVRGPPGVTGPKGEPGAPGPMGPKGDR
GFAGSRGDKGERGESGERGRDGSQGIPGEPGKPGQDGKPGLPGFPGVLGRPGNPGEPGVR
GPTGPMGGNGPPGPAGVKGNQGEPGVGVKGPPGAQGSTGLPGPAGPPGAVGPQGPPGLPG
QVGEAGKPGVPGRDGVPGKDGIPGLPGKQGIAGPPGQSGLKGEQGDSGPPGKAVAGPPGV
KGERGPPGQTLPGLAGERGLTGEKGNRGDKGAAGAKGERGEAGESGEPGEDGAAGSPGPK
GDKGEKGIGLSGPPGRVGPPGLKGDPGLPGSPGPPGPLGKSGDPGPPGVRGETGQNGPPG
PQGERGPPGFAGRPGNVGPPGPAGPPGLAGSPGTNGVKGDKGEVGVGVPGPRGERGDSGP
RGEEGRPGLDGERGSTGPPGIRGIRGEKGDIGLQGDKGEKGDTVLVGGPAGEKGNKGETG
DRGPKGVQGEKGVKGQEGPPGEQGLRGEPGERGSTGFPGARGPGGQKGEAGQPGVPGESG
LPGKDGLLGRKGDKGEIGIIGMRGIKGDRGSKGTCGSDGPKGDKGDAGIHGRSGLPGRKG
EQGEIGPSGAPGTPGKEGLVGPKGDRGFDGLAGPKGAQGEKGERGPPGVPGPPGPRGNDG
NPGITGPQGPAGAKGPEGLQGQKGERGPIGPATVGPRGIPGIPGERGEPGELGPDGAKGD
RGEPGMTEDEVRSYVRSEMSQHCACGGSGPDTRSLPPVRARPTPEQQLALMGEEGRELRV
VVNTNDPDYEHIYSIESYDDPGDELLYFPPSANQSDGEAVKDETDKTVKVEPNKSASAGV
RKTKAAVAGQKAFKVTPVKAVQSRSVRSKRRVTGEAPADQCLLPMEEGSCGRYSLRWYFN
SQVQACRPFVYSGCEGNDNRFVELEDCEEACLGGATGPRPPQTAR
NT seq
9318 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgaagctctgctgtggttcagtccgtctacgacaggttgtgaagatgtgg
agctgggtttttactgtggctgtcctcctgtcctccatgaaacaggctgaagctcagggc
aggtgtaacaatgtgcaagcagcagatattgtttttctggtcgacgggtcctccagtatt
ggccgagctaacttcctgcaggtgaagggcttcatggctggaatcatcaagccgtttgcc
agctctgtcagcgaatcagggatacggtttggtgccatacagtacagtgacacttccaga
gttgaatttacatttcctacctacctgaatggcactgagctggtcaacgcagtacagaat
ctcaactataagggtggaaacacacgcactggtgctggtctcaagtttgtcgccgataac
ttcttcaacccttcatctagtcgggatgtcccaaagatcaccatcctaatcacagacggg
aagtcacaggacagtgtgcaggacccagcacagaagctgcgcagtcaaggagtgcatatt
tttgcagttggtgtaaagagtgcagacagaaatgaattggctcagatatcctcacagccc
agcagcgacttcacctccttcgttggggacttcaaactgttgaacacacttcttcctctt
gtgagcccccgagtgtgttcaaaggcaggaggagtttatgcgagtgatgaggcattctct
ggtccgaccaacattcagttcacgggccagacgtctgattcgctcaggtttcgctggagt
caagcagggggccctgtgagtggttacgtggtccaatatgtgccactctccggcctgggt
cagcctatcacagcagaactgcgtcaggaaactgtttctgcaagtcagaggacctttaca
gcacgagagttgagatcaggaactgactacctggtgactgtcattgcccaataccccaac
agtgtgggagactctgtttctgccaagcaacggaccaggtcattgccaggggtctccagt
ctacgtttgatccaggcaggcttcttctctctctctgtgggctgggatcagccttcctct
cctgtccagggttacaaaatcacttacggaccccgaggtcagccagctgctcagctgttg
gaacagtctctgtccgccgactccacgtccgtcagcctggagtctcttcagcccgacaca
gagtatgtcatcagcctctaccccctgttcccccgaaactctgcgtccccatccatcctc
aacgcaagaacattgcgccttgaggcggtgcagcagttagcagtggagacggtgtcagag
ggcagcgtgcgtgtgcggtggagaggcgtcagcggtgctcgggcctaccgtctggtgtgg
ggaccatttacaggtcgaaacgttgagactgtggaggttgccggtgacagcgagtttcac
actttgtccagcctgctgtccgacaccgagtacatcgtcactatcatcccgctgtatgag
ggcaacactgagggccctgtagcaacagccaggttcaaaatagagcgtcaggagcagcag
gtcctcagagcagctaccacaggcccctcctctattcgcctcacctggagaatcattcag
tcctctcgaggataccgcctgcagtggagtgagggggaaggtggccgtgtccagagcctg
tcctttcccagaagcactagcagccacgagcttactggccttcagcccaacacagaatac
atcatcaccctgttcaccctgtacgacggtcgtgaggaggctacacctgtctccacagca
tccagagaggaacagccagtggggagtgtatccaacctgagagtggtggagtctctgggc
agcactgtcagactcggctggacgggtgtagccggggctacgcagtaccgcatcataatc
ctgaacacagaagcgggaacagaggaaatccggagtatccctggcaaccagacgaccctt
gacctcagagacctgacagtgggagtgtcttatgttgtcactgtcacagcactggtgggg
acaaatgaaggagacccagttactgtctccatcaaaccagagcaaggtgctggcagagtg
actaacctccgagtgacaaacgcaaacagtcggaggattcgaattgcatggacgggtgtg
agtggagcaacagggtacagggtgacctggagacaaggcagcagtgcggaacagtcccgt
cttctcggagccgaggccacagcctataccatagacagcctgcgaccagatgaggcgctg
gtaattggtgttgcagctgtggttgatcagcgtgttggagaggtggtcacgctgtcttct
cgtacaaatccccacggtggatcagtgtctggccttcgcatcgttgacgtcacatctcag
aggatacgcattacgtggtcgccgtccaccagggcaactggctataagatcacttggcgt
cgtgatgatggagttgaatcaactcgtaacgtgcctgctgaagtctcttccttcaccatt
gatggactgcagtcagattcagcttacactctgttagtttcctcactgactggctctcga
gagggaagtcctgccaccctggtaatcagaacagagtcagatagaactgtgattgggact
gtgacgtcactgcaagtccaggagacccgtggagaggttgtccgagtcacctgggttggt
gtgcagggagcaacggcttatcgtgtgtcttggaggagaacagatggcggtgaggaaagg
agtcaggtggtcgggggagatgtgacagcagtggatttagaccagttggaccctggagcc
cagtacgaggtgcaggtcatggctttagttcagaacagagagggaacccccgtgtctgtc
agagtcactacacctggggtcttcaccccagctccgacagtacttgccacaactttacaa
gtggcggagattacccagagttctgtgcggcttggctggaatccactaccaggtgccaca
ggatatattctgcgctggagagacgagacagatgttggtcgaggcttgtctgtcacgctc
cctgctgcctccagctcttaccaggtgactggactgcgtttgggccgtcgatatcgcttc
accgtgcagcccaccttcacaagtggagttgggagagagagctctgtagatgaacgcact
gtgtgtgtgggcgggcgtctggatgtggtgtttttggtgccggcatctaccgatcgagtt
aacctcgcaagacctctgcgtgaactccttacaagtgcagcggggtcgctcaatactatc
ggaccccgagactcacaggtgggagttgtcgtgtacggttacagacccaaaatatggttc
ctgctcaaccgccatggccggtctgacacacttctccaagagatccagtccactcccttt
gatgaaagcccaggaaataacatcggtgaggcggtgacattcaccacacaatatcttctg
agccctgcagctggccgaaggccgagggtccctggtgctgttgtcatcatcgctgacaaa
aaatcagctgacaaccttacacttgcagccagcaggctcagggctacaggtgtgacagtg
ttagcactgggtatggagcaggcagatactgaggagctgcgtcgtgtggtgacggatggc
agcattcagaacatcctgtatgcccgtgatgcagcacagttggacactctacatactgat
ctggcagacatgctctgtggtcttgccagaataccagaggatccaggttcaggttgtact
atatgcccacagggcgagaagggtgatcgtggagacaggggtgagagaggcagagatggt
gcagacggacgtaagggagagcctggtcgtgatggtctgcctgggagggagggccccaga
gggcctgaaggacgtccgggtcagccaggccaaataatacctattgaccccacagggggc
gtgaagggagaaaaaggagagagaggttttcctggcattgatggaagtccaggactgcca
ggacgaccaggttctccaggaaatgcaggggtcccgggttcacagggcctacctggtatc
agaggagacccaggtgaaccaggtgtggcaggtccacaagggccaaagggaggtaaaggt
gaaaggggtgaaccgggctcatctggacccggaggagggtttcctgggaggaaaggagaa
ccaggcatccctggaataccaggtacaccaggtcgaccaggcagcgacggggccaaaggt
gcccctggagttccggggacaccaggtcaggatgggcgcccaggtttagcaggaacacca
ggaccctctatcaagggagaaaagggcagcccaggagagaggggacctccaggagtcggc
agcggggtggccgtgaagggcgagaagggctcccctggagctctgggaactccaggggcc
cagggtcctagagggctgacaggaccacagggtagcaaaggagacaagggcgaaggtgct
gatgggccaccgggacctccaggcagacaaggagagcctggagacaggggtccccgtggg
cctccaggagaaattggtagcaagggtgaccgcgggcagccaggtgagcctggatcacag
ggagacaggggggagagaggaccaactggtgaatctggggagagaggggacccagggaag
ccaggcctcgcaggaactccgggtttgagaggtttaccggggcccagtggaccaccagga
gaaaagggaaacgaaggtgcgcgaggggagcccggcagaagtgcttcaggtttaccaggg
aagaaaggggatcagggggagcgaggcctgcctggttctgaggggtcgaagggagataga
ggagagcagggaccgagaggagagaaagggtcttcagggtcaggagggtcagctgtccct
ggtcctaaaggagagccgggagagaggggactttccggtatcagtggaaggccaggtgcc
aaaggagacacaggtgaaccaggagagaggggggaaaatggacggccaggaatcccggga
aagcctggtctggctgggaaagagggacctagtggagagaagggtgatgagggcacacct
ggggagtctgggcttccagggaagccaggagaaagaggactgagaggactggctggtcaa
ccaggacgaccaggagagaaaggagacatgggagacccaggagagtctggacgcaatggt
agcccaggacctgcagggctgagaggagaaaaaggagaagtgggacctcaagggcctcca
ggaccaccaggaaaagtggctgacatccagggccagctcaaaggagataaaggagagcgg
ggtgaagatggcgacccaggagagcacggcagcaaaggtcagaaaggcgaagcaggaggt
cctggagccccaggcctgcgaggttcggagggacaacgggggccagcaggcacaagaggt
gactcaggagagagaggagcgcctggagagaagggagaaaggggagcatctgggttggat
ggacgtccgggtgtggatggtaaaccaggtacttctggaccacctggacagaggggagat
cctgggaaacagggggatcctgggagagatggtttatcaggacttagaggagagcagggc
cctccaggtcctgttgggcctccaggaactccagggacacctggtaaagcaggcgaggat
ggcaagcctggggctcctggcaaaatgggagaggatggtgttccaggtgaagatgggagg
aagggtgacaaaggagaagcgggagcagctggaagagatggccgtgatgggctgaaagga
gaccggggccctactgggcctgtaggacccactggccttcaggggcctcctggaccagct
ggcccagttggtcctcctggacaggttgtgtatgtaaaaggagctccagcggcatcaatc
ccaggcccacaggggcctccaggaaccccgggtgtacctgggaccccgggagctgctgga
gccagaggcgagagaggtcccgctggccctagaggtgaagctggtgaccctggagaggac
ggagcgccgggcaaacctgggacagcagtggatgtccagaaggcattggcaaaccttggc
attcaggtgtctgatctgaaggtggttgtggacaggaaggacgtaccagtaatcactacg
gtgcagcaggcagagaaaggtgcaaaaggagacagaggtgaatctggagcaagaggaccg
ccaggtttggatggtgctcgtggtgttccaggagagagaggagcaaaaggggaccaaggg
gatcgaggacccataggagcacccgggcctcctggtagagccattggagagcgagggccc
gagggacccccagggcctgctggagagccaggcaagccaggaataccaggggttcccggg
cgagctggggagctaggagaggttggcagaccaggagagaagggggcgcatggagagaaa
ggtgacaaaggcgaatctggtaaaactgggctgacagggccagcaggcccaccaggtcaa
aagggagcatctgctgatgcagttctggctggtacacctggagtccgagggcctccagga
gttacaggaccgaagggagagccgggtgctccaggaccaatggggcctaaaggagatcgg
ggttttgcgggatctcgtggtgataaaggagaaagaggagagtctggagaaagaggacgt
gatggctcgcagggaataccaggagaaccaggaaaacctggtcaggatgggaaaccgggc
ctgcctgggttcccaggagttctaggcagaccgggaaacccaggagagccaggcgttagg
ggcccaactggtcccatgggtggcaatggtcccccaggtccagcaggtgtgaagggtaat
caaggcgagccaggtgttggtgtcaaggggcctcctggtgcccaggggagcacaggtcta
ccgggaccagcaggccctccaggagctgtaggtccacagggccccccaggactgccaggg
caggtgggtgaagcaggtaaaccaggagtccctggaagagatggggtgcccggcaaagat
ggaatacctggattaccagggaagcagggcattgctggaccaccaggccagtccggttta
aagggggagcagggagacagcggccctccagggaaggcggtggctggtcctcctggagtc
aaaggagagaggggtcctccaggccagaccctgccaggcctggctggagagagaggtcta
actggagaaaagggtaacaggggagacaaaggtgctgctggcgccaaaggagagagggga
gaggctggtgaatcaggagagcctggagaagatggggcagcaggatctcctggtccaaaa
ggtgataagggagagaagggaatcggactgtcaggtcctcctggtcgggtcgggcctcca
ggtttaaagggagatcccggtcttcctggttcacctggtcctccagggccactggggaag
tcaggcgatcctgggcctcctggtgtgagaggagaaaccggacaaaatggacctcctgga
ccacaaggggagaggggtcctccaggctttgcaggccgtccaggaaatgttggaccccca
ggccctgctggacctcctgggctggcaggctcacctggtaccaatggggtcaaaggagac
aagggggaagttggcgtcggagtccccggtccaagaggagagagaggagattcggggccc
agaggagaggagggtcgtcctggcttggatggggagagaggatcaacgggtcccccaggt
atccgaggtattcggggagagaagggagacattgggcttcaaggtgacaaaggagagaag
ggggacactgtgctggtgggaggacctgctggagaaaagggcaacaaaggagaaacaggt
gacaggggacccaaaggtgtgcagggagaaaaaggggtgaagggtcaagaagggccacca
ggagagcagggtctcaggggagagccgggagaacgagggtccaccggattcccaggtgct
cgtggccccggtggacagaagggagaagctggccaacctggagtgcctggcgaatcgggt
ttaccaggaaaagatggactgcttgggcgcaaaggggacaagggagagattggcatcata
ggaatgagaggaatcaagggtgaccgcggatccaagggaacttgtggaagcgatggaccc
aaaggagacaagggggatgcaggtattcatggacgatccggcctaccaggaagaaaaggt
gaacagggagaaatcggaccctctggagccccagggacccccggaaaagagggattagtc
ggccccaagggagaccgtggtttcgatggcctcgcaggacctaaaggggcacagggagag
aaaggtgaaaggggtccaccaggggtacctggtcctcccggtcccagaggaaatgatggg
aacccaggcatcactggccctcagggaccagcaggtgctaaaggcccagaggggctccaa
ggacagaagggagagagaggtccaattggtcccgccacagtaggtccgcgcggtatccca
gggatcccaggggagcgaggagagccgggagagttgggcccagatggagccaagggagac
agaggagagccaggcatgacggaggatgaagtcagatcgtacgttcgctctgaaatgagt
cagcactgtgcgtgtggaggatcaggcccagacactcggtccctgcccccggtcagggct
cggcccacaccagagcaacaactggccctgatgggtgaggagggccgcgagttgcgtgtg
gtggtgaacacgaacgaccccgactacgagcacatctactccattgagtcctatgatgac
cccggggatgagctgctctacttccctccctctgccaaccagagtgatggtgaggctgtc
aaagatgaaactgacaaaacggtcaaagttgaaccaaacaaatcagccagtgctggcgtt
aggaaaacaaaagcagcagttgctggtcagaaagcattcaaagttacacctgtgaaagca
gtccagtccagatcagtcaggtccaagaggagagtcacgggggaagctccagctgaccag
tgcctgctgcccatggaggaggggagctgtggccgatacagtctgcgctggtactttaac
agtcaggttcaggcctgcaggccgttcgtctacagtggctgtgaagggaacgacaaccgc
tttgttgagctggaggactgtgaggaggcctgcttagggggggccacaggtcctcgtccc
ccgcagacagcgcgatga
DBGET
integrated database retrieval system
