Acanthopagrus latus (yellowfin seabream): 119022125
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Entry
119022125 CDS
T08233
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03030
DNA replication
alat03410
Base excision repair
alat03420
Nucleotide excision repair
alat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119022125 (rfc1)
03410 Base excision repair
119022125 (rfc1)
03420 Nucleotide excision repair
119022125 (rfc1)
03430 Mismatch repair
119022125 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alat03032
]
119022125 (rfc1)
03400 DNA repair and recombination proteins [BR:
alat03400
]
119022125 (rfc1)
DNA replication proteins [BR:
alat03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
119022125 (rfc1)
DNA repair and recombination proteins [BR:
alat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
119022125 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_7
AAA_5
AAA_30
AAA_17
BRCT_2
AAA_33
AAA_14
RuvB_N
AAA_16
Rad17
RNA_helicase
AAA_18
nSTAND3
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
119022125
NCBI-ProteinID:
XP_036958595
LinkDB
All DBs
Position
1:15096134..15105566
Genome browser
AA seq
1183 aa
AA seq
DB search
MDIRRFFQPTVAKPAVQKPASNGNIKTEEKTTRKKNPLSSDEEVKKKKETAKVKSSKSEE
KRKDGEKKRKKHAVIESDSEDEDVKKSKKSPKAKQKMNKTEPPPKKDPVQYVSETDSDSD
NFQTLKKASKPKQNGTAKQTKSDAASGGAKESLKSPVRPTSTQGKTAVKSPVTPKTAPPP
QPKQTPTSVLDYFGSTAIQRSDKKLVASTKRKAPTQDTDDLSDEQIARALQMDEEMELEK
QVHEDEEFARTLAMLDEEPQAKKARKGSDEKPAPAELPKKSSTDSAATSKSSLSKTNQRG
GALEDVISPSPKKNQAPVKTSSKLAMMKKRDEERNEGQKSKTPLSPAKIKISPKKEPVTS
ISDMKFTPKTGTTPTAVKISPKKPESTSTSPDDAEKKKFNTSAYRNYLNRDGPRALGSKE
IPQGQENCLEGCVFVVTGVLESMERDDVKSLIERYGGKVTVSISKKTTYLVQGRDSGVSK
LEKAESFGTTILDEDGLLELIRTKPGKKSKYEIAAEAESKASKTRTPPSKTSKSTPRAQK
ISPSKGNSRSPHTPSPSKTGLVQGHAARTKNGGTPPGRGSGHTARRGLGLSSSSSSSAPT
ASSPTPSGESLLWVDKYRPLSLKTVIGQQGDQSCANKLLRWLQNWYKHHSGGASKPAAAR
FGKFGGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVI
AESLNNTSIENFYKGTSQTVSSKHVLIMDEIDGMAGNEDRGGIQEMISLIRNTKIPIICM
CNDRNHMKIRSLANYCFDLRFQRPRVEQIKGAMMSIAYKEGIKIPPPALNEIILASNQDV
RQVIHNLSMWSSKDKLMTYDQCKSDAAKARKDMKMGPFDVCRKVFAAGEETANMSLIDKS
DLFFHDYSLAPLFVQENYPHVRPRAAGNDLKSHLVLLSKTADSISDGDLVDRQIRSRQNW
SLLPTQAIYASVLPGELMRGYMSHFPTFPSWLGKNSSTTKHSRIVQELASHMGLKTMSSR
QAVNLDYLHYLRQALLNPLQRHGAEGATQAVKLLDDYQLIKEDVDSIMEISVWGGQPDPY
SKLDSKVKAAFTRTYNKDVHLTPYSLQVVNKGRRGGGGGGGGESELGGEEVDNEAQQSEE
EGDSLKTDAMIKQKKAKATKETKKEKKEDSGKGKGKGKGKGKK
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttcagccgactgtagccaagcctgctgtgcagaaaccagcc
tcaaatggaaacatcaaaacagaggagaagacgacgagaaagaagaaccccctctcttca
gacgaggaagtgaaaaagaagaaagagaccgccaaggtaaaaagctccaagtcagaggag
aaacgcaaggatggtgagaaaaaacgaaagaagcacgcagtcatagaatcagactcagag
gatgaggatgtgaagaagtcaaagaaatcccccaaagcgaaacagaagatgaacaagaca
gagccccctcccaaaaaagatcctgtgcagtatgtctctgaaacagattcagacagtgac
aactttcagaccttgaagaaagcgtccaaacccaagcagaacggcacagcaaaacagaca
aagtcagatgcagcaagcggaggggccaaagaaagtctgaagtctcctgtcagaccaaca
tccacccaggggaaaactgcagtcaagtctcctgtcacccctaagacggccccgcctcct
cagcccaaacaaaccccgacctcagtgctcgactattttggcagcacagccattcagcgc
tcggataagaagctcgtagccagcaccaaacgaaaggctccgactcaggacacagatgat
ctgagtgacgagcaaattgccagagcgctgcagatggatgaggagatggagctggagaag
caggtccatgaggatgaggagtttgccagaacactggccatgctggatgaagagcctcaa
gcgaaaaaggctcgtaaaggctcagatgaaaaaccagcccctgccgaacttcccaaaaag
agcagtacagactccgctgctaccagcaagagcagcctgtcaaagaccaatcaaaggggc
ggcgcgctggaggatgtgattagtccgtctcctaagaagaaccaagctcccgtcaaaacc
agctccaaactggccatgatgaagaaaagagatgaagagagaaatgaagggcagaagagc
aaaacaccactttcacctgctaaaattaaaatctctcccaaaaaggagcctgtcacttcg
atctcagacatgaagttcacacctaaaacaggaaccacgcccacggcagttaaaatttct
cccaagaaaccagagagcacaagtacgagtcctgatgacgcagagaagaagaagtttaac
acttctgcttacaggaactacctcaacagagacgggccaagagctctgggctccaaggaa
attccacagggtcaagagaactgtctggagggctgtgtgtttgtggtgacaggggtcctg
gagtccatggagagggacgatgtcaaatccctcattgagcgttatggaggcaaggtgact
gttagtatcagcaagaagacgacctacctggtgcagggcagagacagcggagtctcgaag
ctcgagaaggcggagagtttcggcaccacgatcctggatgaggatggtctgttggagctg
atcagaaccaaaccgggaaaaaagtccaaatacgagattgctgcagaggctgagagcaaa
gcctcaaagaccaggacacctcctagcaagacctcaaagagcacccccagagcccagaag
atatctccctctaagggtaattccaggtctcctcacaccccgagcccttcaaagaccggc
ctggttcaaggccacgctgccaggaccaaaaatggtggcactccacctgggagaggctca
ggtcacacagcccggagggggctgggcctctcctcctcctcttcatcgtcagcccctaca
gcttcatcaccaacaccatctggagagagtctgctgtgggtggacaagtaccgcccgctc
tctttgaagactgtgattggccagcagggagaccagagttgtgccaataagctgctccgc
tggctgcagaactggtacaaacatcacagcgggggtgcctccaagcccgcagctgcaagg
ttcggtaagtttggaggaggtaaagatgatggttcaggattcaaagctgctctgctctcc
ggaccgccgggagtggggaagaccaccacagctgccctggtctgtgaggagttgggcttc
agctatgtggagatgaacgccagctgcactcgcagcaaaaacagcctgaaggaagtcatc
gctgagtcacttaacaacaccagcatcgagaacttctacaaaggcacgtctcaaacagtg
tccagtaaacacgtcctgatcatggatgagatcgatggcatggctggcaacgaggaccgt
ggagggattcaggagatgatcagcctgatccgaaacacaaagattcccatcatctgcatg
tgtaacgatcgtaaccacatgaagatcagatcactggccaactactgcttcgatctgcgc
ttccagaggccgcgggtggaacaaatcaagggagccatgatgtccatcgcttacaaggag
ggaatcaagatcccgcccccagctcttaacgaaatcatcctagcctccaatcaggacgtc
cgacaggtgatccacaacctgagcatgtggtcgtccaaagataagctgatgacatacgac
cagtgcaagtctgatgcagccaaagctcgcaaagacatgaagatggggccatttgacgtt
tgtaggaaggtgttcgccgcaggggaggagacggccaacatgagcctcatcgacaagtcg
gacctgttcttccacgactactcgctagcaccgctctttgtccaagagaactatccacat
gtacggccaagggctgccggtaatgatctgaagtctcacctggtgttgctcagcaagacg
gctgactccatatctgacggagacctggtggacagacagatccgctccaggcagaactgg
tcgctgttgcccacccaggcgatctatgccagcgtgctgccaggtgagctcatgagaggc
tacatgagtcacttccccaccttccccagctggctcggaaaaaactcctccaccactaaa
cactctcgcatcgtccaggagttggcctcacacatgggtttaaagacgatgagcagcaga
caggcggtgaacctcgactacctgcactacctgcggcaggcgctgttgaacccacttcag
aggcacggagcggagggcgccacccaagctgtgaagctgctagacgactatcagctcatc
aaggaagacgtggacagcatcatggagatcagcgtctggggcggacagccagacccctac
tccaaactggactccaaggtgaaggcagcattcacacggacctacaacaaagatgtgcac
ctgacgccgtactcccttcaagtagtgaacaagggccgtcgtggtggtggtggtggcggc
gggggggagtcggagttgggaggagaggaggtggacaacgaagcgcaacagtctgaggaa
gagggagacagcctgaaaactgacgcaatgatcaaacaaaagaaggccaaagccacgaag
gagacaaagaaagagaagaaggaagattctgggaagggcaaaggaaagggcaaaggcaag
ggaaagaaatga
DBGET
integrated database retrieval system
