Acanthopagrus latus (yellowfin seabream): 119022152
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Entry
119022152 CDS
T08233
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
FN3_Tor_3rd
DUF4959
Herpes_DNAp_acc
Motif
Other DBs
NCBI-GeneID:
119022152
NCBI-ProteinID:
XP_036958630
LinkDB
All DBs
Position
7:26619608..26659437
Genome browser
AA seq
1586 aa
AA seq
DB search
MTPYLLSSPSSFWLMLCFLLSVLLLSPGVHGQGRLKLTVLSEDRLQMKWKEADGPVQGYK
VRVRPISEVPQPELMLTTTRGRATVAGLDSSQEYTLQVLVLNGTTEKLLAKRRFTMEGLR
EGEMIRSDSREQRKKLLPGGSGSGDLDDVTEALMGLPTILYPDPTTTTTAAPAAATTTED
PTTETPSQLPDEAPEKASKEKRKRKKEKERDRSKVENKEEQGTTQGKAAEEKSRKSPFTT
QPVTGVSPRKPFECDSNAAADIMLLVDGSWSIGRTNFRRVRDFLEGLMTPFHIGPDHIQI
GLTQYSGDPRTEWQLNNFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMEENMRAEAGARS
DTPFFLVLLTDGKSQDDAIAAANRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNV
NDFPLLSKLVARLVHILCGRIEERGISKRMEPRPTADPALSYPSPTDLRFSELGSREMKL
HWNNPAKPVQQYRVVYHSAEGQSPQEVVLAGSESTVLLEGLSSQTLYHVSIFPVYEDSVG
LALRGTVTTLPLAMPANLEVTPSSYSALRVSWGAAPGATQYMILYSALNHGEPDDAKEEK
FSADQTVVELAELLPATDYSVTLYALYDEEPSDPVTAVATTFPLPPPMSVQFPVVTHSML
RVTWVPGAMDVPGHRITYSTNHGSDVKQVEVTRMNSVLVQNLSSLSRYLISIQSHYPQGL
SAALTSNVTTLKVPSPSDLRVTNFSGSDITVRWEAAADDVVSYLIKWISLSGGDLRQLRV
SGESEGAILEGVEDDKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSVSVSDETAVSL
LVSWVPPNAHVLQYRVSYTALTGDESQDSTVLVPGGEKRVVLDSLQPDTRYSILVTAEYR
NREGGSGSAQGKTTSLRVSSVSVVRSDHSSICVSWRPVSAVNGYRIVIQSVKDKQTKEET
VSESSSSHCFTDLEPETLYRISVHSLLGSAEGTAVSILHPTATAPARIPIHPRIYPIHNE
VCPEVTIRHSIVKGFDMMEAFGLTPRAHSSVEGVAAEPFVFNTLPTYTVYRDTQLTQSTK
FIHPAGFSPEHTISIAFRMLQDTPREPFALWQLTDNDFQPKMGVVLDPTTKHLVYFSLDY
RGEVQELTFDHSQVHRLFYGSFHKVHLSVSQVSVSLFVDCQHVGERPARPLGNLPTDGFE
MLGKLVKTRGPNSGSAPFGLQSFEIICNTTWPLEDTCCDLPGVRDEESCPAPAYTCTCSS
NVPGASGSPGPTGKPGPRGEKGEKGDQGQKGEVGPPGKSGQEGGLGPLGSAGPRGMTMQG
KMGPPGARGEKGDPGRPGVQGSPGPPGPKGEEGIPGPKGIRGAEGSIGPPGIAGTRGFQG
MPGHPGPLGERGPSGPVGPMGLPGNKGERGEKGEPQSMAMIYQLVTQACEQLVHKEVLKL
DMFINEVSRKPAPIEEPVGPPGEPGIPGQRGPPGTRGTEGRRGRTGEPGRPGYPGEQGRR
GMPGEKGAAGTNVQGPAGVKGFAGPPGESKLGIPGSKGDDGTSGPQGIPGPPGQPGEVGP
PGVCDSSGGCHRAPQQTEDPYYGYQP
NT seq
4761 nt
NT seq
+upstream
nt +downstream
nt
atgactccttacctcctttcttcaccatcatctttctggctaatgctgtgtttcctgctc
agtgtcctcttgttgtccccaggggtccatggccaaggtcgtcttaagctgacagtcctg
tctgaggacagactgcagatgaaatggaaggaggctgatggacctgttcagggctacaag
gttcgagtgagacccatctcagaggtgccacagccagagctgatgttgaccaccactcgg
ggccgggcgacggtggctggactggactccagtcaggaatacaccctccaagtccttgtg
ctcaatgggactacagagaaacttctggcaaagagacgatttaccatggaaggacttagg
gagggagaaatgatccgcagtgatagccgagagcagaggaagaagctgttgccaggcggg
tcaggttcaggagatcttgacgatgtaacagaggctctcatgggcttaccaacaattttg
tatccggaccccaccaccaccaccactgcagctcctgctgctgctactactacagaggac
ccaacaacagaaaccccctctcagctccctgatgaggccccagagaaagcctccaaagag
aagaggaagcggaagaaagaaaaagagcgggatcgctctaaagtggagaataaggaggag
cagggcacgacacagggcaaagcagctgaggagaaatcccgcaagtctcccttcactacc
caaccggtgacaggtgtgtctccaaggaaaccatttgagtgtgacagcaatgcagcagca
gacatcatgctgttggtggacggctcctggagcattggacgcaccaacttcagacgggtc
agagatttcctggagggcctgatgacacccttccacattgggccagaccacattcaaata
ggtctgactcagtacagtggagacccccgcacagaatggcagctcaacaacttcaccact
aaagaccagctgcttgaggcagtcaggaatttcagatataagggagggaacacattcaca
ggccaggctctgctccacgtgatggaggagaatatgagggccgaggcaggtgcgaggtca
gacacaccttttttcctggtcttgttgacagatgggaagtctcaggatgacgccattgct
gcggcaaaccggttgaagaatgccggcgtggagatcatcgctgtaggtgtaaagaatgct
gatgaagccgagttaagacaagtggcgtcggagccagtggacctgaatgtctataatgtc
aatgactttcctctactcagcaaactggtggcacgactggtccacatcctgtgtgggagg
atagaggaacgtggcatctcaaaacgaatggagcctcgacctacagcagacccagccctc
tcctacccaagtcccactgatctccggttttctgaactgggttccagagaaatgaagctt
cactggaataaccctgctaaaccagtccaacagtacagagtggtctaccacagcgctgag
ggtcagagtccacaggaggtggtactggctggctctgagtccactgtgctgctggaaggc
ctgtcctctcagacactgtaccacgtgtccatcttccccgtgtatgaagacagtgttggc
ctggcactcagaggaactgtcactacattaccactggccatgcctgccaacctagaagtg
actccgtcctcttacagcgcgctgcgagtgagttggggtgcagcacccggtgcaacccaa
tacatgatcctgtactcagcactcaaccacggagaacctgatgacgctaaggaggagaaa
ttcagtgcagaccagacagtggtggagctggcagagttactgccggctacagattactca
gtcactctgtatgccctgtatgatgaggaacccagtgaccctgtcacggcagttgccacc
acattccctctgccaccaccaatgagtgttcagttcccagtggtcacccacagtatgctg
agggtgacctgggtacccggagccatggacgtccctggccaccgaattacatacagtact
aaccatggcagtgatgtcaagcaggtggaggtaacaagaatgaactcagtgctggtgcag
aacctctcctctctgtctagatatctgatttcaatccagtctcactacccacaaggcctg
tctgcagcactcaccagcaatgtcaccacattgaaggtgccctccccatcagacctcagg
gtgacaaatttctcaggcagtgacatcaccgtgcgctgggaggctgcagctgatgatgtt
gtgtcctacctcatcaagtggatctctctgagtggaggagaccttagacagctgagggtc
agtggtgagagtgagggggccatcctggagggggtggaggacgataaggaataccagatc
tcgctgtctgctctgtatggggatggagcgcagagtgaagctgtagcaatacgctacagc
accttgtcaggtggaggcccatccagtgtatctgtctcagacgagactgcggtcagctta
ttggtcagctgggtacctcctaatgctcatgtccttcagtatcgtgtgtcttacactgca
ctgactggtgatgaaagccaggacagcactgtgttggtcccaggtggtgaaaagcgtgtg
gtgctggattcgttacagccagatacgcgttacagtatcttggtcaccgctgagtaccgc
aacagagaaggaggcagcggttcagctcagggcaaaaccaccagtctgcgggtcagcagt
gtgagtgtggtcaggtcagaccactccagtatctgtgtgtcctggagacctgtgtctgca
gtcaatgggtatcgtattgtcatccagtctgtcaaagacaagcaaacaaaggaggaaact
gtcagtgagtccagcagcagtcactgtttcactgatctggagccagagactctgtatcgc
atcagcgtgcactcccttcttggttcagcagagggcactgctgtctccattctccatcca
acagctacagctccagccagaattcccatccatccccggatctaccctatccacaatgaa
gtctgtcctgaagtgaccatcagacacagcattgttaaaggatttgacatgatggaagca
tttggtctgacgccgagagctcactcgtctgtggagggcgtggcagccgagccttttgtg
ttcaacaccctccccacctacactgtgtacagagacacccagctgacacagagcaccaag
ttcatccaccctgcaggcttctctccagagcacaccatcagcatcgccttccgcatgttg
caggatacacccagggagccatttgccctctggcaactaacggacaacgatttccagccc
aagatgggagtggtgctggaccctacgacaaaacatctggtgtatttcagtctggactac
aggggagaagtgcaggagctgacctttgaccattcgcaggtccacagactgttctatggc
agttttcacaaggttcacctgtctgtcagccaggtgagtgtgtccctgtttgtggactgc
cagcatgtgggcgagaggcccgcccgcccgctaggcaacctaccaactgatggctttgag
atgctgggaaaactggtgaagaccagaggacccaatagtggatctgcaccgtttggactg
cagtcctttgagatcatctgtaacaccacatggcctttagaggacacctgctgtgatctg
cctggagtgagagatgaggagagctgtcctgccccggcgtacacctgcacctgctcctcc
aacgttcctggagcctctggttcccctggcccgactggaaagccaggcccccgtggtgag
aaaggagagaagggagatcaaggccaaaagggggaagtgggtcctccaggaaagtctgga
caagaaggaggtcttggcccccttggcagcgcagggccccgaggcatgaccatgcagggc
aaaatgggtccacccggtgcaagaggggaaaaaggagatcctgggcggccaggagtccag
ggttcaccaggacctccaggtccgaaaggggaggaggggattccaggccccaagggcatc
aggggggctgaaggcagcattggtccacccggcatcgctggaaccagaggtttccaagga
atgccaggacatccagggcctttgggggaaaggggcccctcaggacctgtgggacctatg
ggtctgccaggaaataaaggggaacgaggagagaagggggagcctcagtcaatggccatg
atctaccagctggtcacacaggcctgtgagcaactagtccataaggaggtgttaaagctc
gacatgttcattaatgaggtaagtcgtaaaccagctcctattgaggagccagtggggccc
cctggggaacctggtataccagggcagaggggccctccaggcaccagaggcaccgaaggg
cgtcgaggccggacaggggaacctggcaggccaggatatccaggagaacaaggaaggaga
ggcatgccaggggagaaaggtgctgcaggaaccaatgtccaggggcctgcaggggtcaaa
ggatttgcaggtcctccaggtgaatcaaagctggggatcccaggctctaaaggagatgat
ggtacgtcaggaccccaagggatccctggacctcctggacagccgggcgaggttggaccc
ccgggtgtgtgcgacagcagtggaggctgccacagagctccccagcaaacagaggaccct
tattatggttaccagccttga
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