Acanthopagrus latus (yellowfin seabream): 119022540
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Entry
119022540 CDS
T08233
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04510
Focal adhesion
alat04512
ECM-receptor interaction
alat04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119022540 (col2a1a)
04518 Integrin signaling
119022540 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119022540 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119022540 (col2a1a)
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119022540 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
119022540
NCBI-ProteinID:
XP_036959403
LinkDB
All DBs
Position
7:10796872..10825514
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AA seq
1418 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQTIGARGQKGEPGEIADVVGPKGPPGPMG
PPGEQGPRGEAGAKGDKGNAGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFAAQMAGGFDE
KAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGEAGEPGAAGPVGPRGPPGPSG
KPGSDGEAGKPGKAGERGPSGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGENGAAGAKG
ESGASGENGAPGPMGPRGLPGERGRPGAAGSAGARGNDGLPGPAGPPGPVGPAGAPGFPG
SPGAKGEAGPTGARGSEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGASGIAG
APGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGDLGPAGPQGAPGPAGEEG
KRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGVPGERGVPGAVGPKGAGGDPG
RTGEAGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARGQPGVMGFPGPKG
ANGEPGKPGEKGLVGRPGLRGLPGKDGETGSSGPSGPAGPAGERGEQGQPGPSGFQGLPG
PPGSPGEAGKPGDQGVPGEGGVPGAVGARGERGFPGERGGAGAQGLQGPRGLPGTPGTDG
PKGAIGPAGAAGPQGPPGLQGMPGERGTGGIPGAKGDRGDNGQKGPEGAPGKDGSRGLTG
PIGPPGPSGPNGAKGETGPTGPTGATGVRGAPGDRGEGGPPGPAGFAGPPGADGQPGAKG
EVGEGGQKGEGGAPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGATGFPGAAGRVGPPG
PNGNPGAAGPAGSAGKDGPKGARGDAGPPGRQGDAGLRGPAGAQGEKGEPGEDGPPGADG
PSGPMGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGAGGDRGPPGPVGPPGLSG
PAGEPGREGTPGSDGPPGRDGATGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQGDRG
EAGAQGPAGPPGPGGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPPGPAG
DSGASGPAGPSGAKGPPGPNGPAGKDGANGTPGPIGPPGPRGRSGETGPAGPPGNAGPPG
PPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNNQIENL
RSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVYPSIA
RVPQKNWWTSKSKDRKHVWFGETMNGGFHFSYAQDGPAANAAAVQLTFLRLLSTEASQNL
TYHCKNSVAYMDQATGNLKKALLLQGSNDVEIRAEGNSRFTYGVLEDGCKKHTGRWGKTV
FEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaggaagaggatgaccagacaatcggcgctaggggccagaaa
ggtgaaccaggagagatcgcagatgttgtaggaccaaaaggaccaccagggccaatgggc
cccccaggtgagcagggaccacgcggagaggctggcgctaagggtgataagggaaatgcg
ggaccacgaggaagagatggtgagcctggcacccctggaaaccccggaccccctggccca
cctggaccaccaggacttggaggaaactttgctgctcagatggctggaggtttcgatgag
aaggctggaggcgctcagatgggtgtgatgcaaggaccaatgggtcccatgggtcctcgt
ggtccccctggaccttctggagctcctggaccccaaggtttccaaggtgcccctggagag
gctggagagcctggtgcagctggaccagtcggacctcgtggaccacctggaccttctgga
aaacctggaagtgatggtgaggctggcaaacctggaaaagctggtgagcgtggaccttca
gggcctcagggagcacgtggattccctggaactcctggacttcccggaatcaaaggacac
agaggtcaccctggtctggatggagctaagggagaaaatggagctgcaggagccaagggt
gaatctggtgcttcaggagagaacggtgcccccggacccatgggtccacgtggtctgcca
ggtgagagaggacgtcccggagctgctggatctgcaggtgcccgtggaaatgatggtttg
cccggtcctgctggtccacctgggcctgttggtcctgctggggcccctggtttcccagga
tctccaggagccaagggagaagctggtccaactggtgcccgtggatctgaaggagcacag
ggacctcgtggagaggccggtactccaggatctcccggacctgctggtgcatcgggtaac
cctggtactgatggtattcctggagctaaaggatctgctggtgcttctggtattgctggt
gctcctggattccctggcccccgtggcccacctggaccccagggagcaacaggacctctt
gggccaaagggacagtctggagaccctggtcttcctggattcaaaggtgaagctggaccc
aaaggagatcttggacctgctggtcctcaaggtgcccctggccctgctggtgaggaagga
aagagaggcgccagaggagagcctggagctgctggaccacttggacctccaggagagaga
ggagcgcctggtaaccgtggtttcccaggtcaggatggtcttgctggtgctaagggtgtt
cctggtgaacgcggtgtccctggtgctgttgggcctaaaggcgctggtggagaccctgga
cgcacaggagaggctggccttcccggagccagaggtctcactggtcgtcccggagatgct
ggtcctcaaggcaaagttggaccctctggtgccgctggtgaggatggtcgccccggccca
cctggccctcagggagcccgtggacagccaggagtgatgggattccccggaccaaaagga
gccaacggtgaacctggaaagccaggagagaagggtcttgtgggtcgtcctggtctgaga
ggtctgcctggaaaagatggtgagactggttcttctggaccttctggccctgctggacct
gctggagagagaggagaacaaggacaaccgggaccttctggcttccagggactgcctgga
ccacctggttcccccggagaggctggaaaacctggagaccagggtgttcctggagagggt
ggagttcctggtgctgttggagctagaggtgaacgtggtttccctggtgagaggggtggt
gctggagctcagggtcttcagggacctcgtggacttcctggaacacctggaactgatgga
cccaagggagccattggaccagctggtgctgctggacctcagggaccccccggcctacag
ggaatgcctggagagagaggaaccggtggtatcccaggagccaagggagacagaggtgac
aacggacagaaaggacctgagggagctcctggaaaggacggttctagaggtttgactggt
cccattggtcctcctggcccatctggacccaacggtgccaagggtgagactggacctact
ggccctactggtgctactggtgttcgtggtgctcctggtgaccgcggtgagggtggccct
cctggtcctgctggttttgctggacctcctggtgcagatggtcagcctggtgcaaaggga
gaggttggtgagggtggacagaagggagaaggtggtgctcctggacctcaaggaccatct
ggagctcctggacctgtgggacctactggtgtaactggacctaaaggagcacgtggtgct
cagggagctcctggtgctactggtttccctggtgctgctggcagagttggacctcctggc
cctaatggaaaccctggcgctgctggccccgctggttctgctggtaaagacggaccaaag
ggtgctcgtggtgatgccggtcccccaggaagacagggagacgctgggcttcgcggccct
gctggcgcacaaggagagaaaggagagcctggagaggatggacctcctggtgctgatggg
ccttcaggtcctatgggtctggctggatcccgtggtattgttggtctgcctggacagcgt
ggagagagaggcttccctggtctccccggaccttccggagagcctggtaaacaaggatca
cctggcgctggtggtgaccgtggacctcctggacctgtaggaccccctggactttctgga
cccgctggagagcctggtagagagggtacccccggatcagatggacctcctggtagagat
ggagctactggagtcaagggagagagaggtaacactggtcctgctggcgcccctggagct
cctggtgcccccggagcccccggacctgtcggacccctcggcaagcagggagacagagga
gaagctggcgctcaaggacctgccggaccccctggacccggtggagctagaggaatggct
ggaccacaaggacctcgtggagacaagggagaggctggtgagactggagagaggggacag
aagggtcaccgtggattcaccggtctgcagggtcttcctggacctcctggtcccgctgga
gacagtggagcctctggacctgcaggaccaagcggagctaagggaccacctggaccaaat
ggacctgctggcaaagatggagcaaatggaacacccggtcccattggaccccctggacct
cggggacgttctggagagactggtcctgcaggtcctcctggtaatgccggaccccctggt
cctcctggtcctcccggccctggcatcgacatgtctgccttcgccggtctgggccagact
gagaagtcccccgatcctctcaggtacatgagagctgatgaggcctctagctccctgaga
cagcacgacgtggaggttgattccacactcaagtccctcaacaaccagattgagaacctg
cgcagccccgacggctcccagaagaaccctgctcgcacctgcagagacctgaaactgtgc
caccctgagtggaagagtggtgactactgggttgatcccaacattggcagcacagccgat
gccatcaaagtcttctgtaacatggagacaggagagacctgcgtctacccaagcatcgcc
agggtaccacagaagaactggtggaccagcaagagcaaggaccgcaagcacgtctggttc
ggagagaccatgaacggaggattccatttcagctacgctcaggatggccctgctgccaac
gctgcagcagtccagctgaccttcttgaggctcctgtccactgaagcatcccagaacctc
acttaccactgcaagaacagcgttgcctacatggaccaggccacaggcaacctgaagaag
gctttgctgctgcagggctccaacgatgtggagatccgcgcagagggcaacagtcgcttc
acatacggcgtgctggaggatggctgcaagaaacacacaggccggtggggcaagactgtc
tttgagtacaaaacacagaaaacctcccgtctgccaatcgtggacattgctcctatggac
atcggaggagcggatcaggagtttggagtggatgtaggcgcagtctgcttcttgtaa
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integrated database retrieval system
