Acanthopagrus latus (yellowfin seabream): 119022980
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Entry
119022980 CDS
T08233
Name
(RefSeq) cadherin-4-like isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
119022980
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
alat04515
]
119022980
Cell adhesion molecules [BR:
alat04515
]
Cadherins
Major cadherins
119022980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_FAT4_N
ASFV_J13L
DUF2254
Cadherin_CELSR2_9th
DUF2304
DUF5527
Motif
Other DBs
NCBI-GeneID:
119022980
NCBI-ProteinID:
XP_036960418
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Position
7:complement(9875049..10119442)
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AA seq
939 aa
AA seq
DB search
MDEEMHTEDCTVVCEPAHLQHIIRRNNGEHASKVPCRAGFSQSFYSVLISRDVLQDRAIV
KDTTVSSQKVKFDDCMGNEAVDFQSSDPFFSVRADGSIFAKGQGASLEEPVQFKLTARGP
HAHVWETVVQLALIDPPSPQQNENEVTKEEGKVAERKERKEAFQAPPPVIMFSGSRLNSS
KGLRRQKRDWVIPPINVAENSRGPFPQMLVSIRSDQDQDISIRYSITGVGADQPPNEVFN
IDPVLGKMFVTKPLDREHRSSYHLRAHAVDMNGNQVENPIDLYIFVIDMNDNRPEFKNQV
YNGSVDEGSKPGTPVMHVSAFDADDNTTANGMVRYRILSQMPHSPIPNMFTINSETGDIV
TVAPGLDREKVSQYTIIVQATDMEGNLNFGLSNTATAIITVTDINDNPPMLTSRTFSGEV
PENRVDVVVANLTVIDADQPHSPNWNAVYRIISGDPSGHFTIRTDPVSNDGMVTVVKPVD
FEMNRAFMLTVVVSNQAHLASGIQSSLQSTAGVTISVQDVNEPPYFPTNPKHIRFEEGVP
AGTSLTTFSASDPDRLQMQQTIRYSKLNDPADWLSINRTNGQIITTAMLDRESIYVKNNI
YEATFLATDNGSPAASGTGTLQIYLIDINDNSPALIPKESQICERMNRNVNGVNITAADA
DTDPNAGPFVFELPNFPTSIRRNWTISRISGDYARLGLRYQVYLEPGVYEVPVIVSDSGN
PPLSNRSVIKVKVCPCDENGDCTTLGAVAAAGLGTGAIISILICIIILLSMVLLFVVWIK
RREKERQTKQLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDSLEHIMSKPPGVR
RVDERPIIPESQYPIRAVVPHPGDIGDFIHEGLRAADNDPTAPPYDSLLVFDYEGSGSTA
GSVSSLNSSSTGDQDYDYLNDWGPRFKKLADMYGGGDDD
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagagatgcatacggaggactgcactgtggtgtgtgaaccagcacatctccaa
cacatcatcaggaggaataatggggagcatgcttccaaagttccctgccgggctggtttc
tcacaaagcttctactctgtgctgatttcaagggatgtactgcaagaccgggccatagtt
aaagataccactgtgtcatcacaaaaagtgaagtttgatgactgcatggggaatgaagcg
gtggatttccagagcagtgaccctttcttcagtgtgcgggcagatgggtccatctttgcc
aagggacagggagccagcttggaggaaccagtccagtttaaactgacagcaagaggtcca
catgcacatgtctgggagactgtggtccaactggctctaattgacccaccttcacctcaa
caaaatgaaaatgaggtcacgaaggaagaggggaaagttgcagagagaaaagagaggaag
gaggcgtttcaggcaccaccccctgtcatcatgttctcagggtcccgcctgaacagctcc
aagggtctgcggagacagaagagggactgggtgatcccaccaatcaacgtggcagaaaat
tctcgaggaccattccctcagatgctcgtcagcattcgttcagaccaggaccaggacatt
tccatccggtacagcatcactggggtgggagcagatcaaccacccaacgaggtgttcaat
atcgaccctgtgctcggaaagatgttcgtcaccaaacctcttgatcgagagcatcgctct
tcttaccatttgcgagcccatgctgtggacatgaacggaaaccaggttgagaaccccata
gatctgtacatctttgtcatcgacatgaacgacaacagaccagagttcaaaaaccaggtg
tacaacggctctgtggacgaaggctctaaaccaggaacaccagtgatgcacgtctcagca
ttcgatgctgacgacaacactacagctaacggaatggtgcgctatcgaatcctttcccaa
atgccgcacagccccatacccaacatgttcaccatcaacagtgagactggagacattgtg
acggtggcacctggtcttgatcgagagaaagtgtcccagtataccatcatcgtgcaggcc
acggacatggagggcaacctgaactttggcctttccaacacagccactgccatcatcact
gtaacggacatcaacgacaaccctcccatgctgacctctagaaccttttccggtgaggtc
ccagagaaccgggtcgatgttgtggtggctaatctgacggtgatagatgctgatcaaccg
cactcccctaactggaacgctgtctacaggattatcagcggggacccttctgggcacttc
accatccgcactgaccctgtcagcaacgacggcatggtgaccgtggtgaagccagtagac
tttgagatgaaccgtgccttcatgctgacggtggtggtgtccaaccaggcccatctagcc
agcggcatccagtcctcactccagtcgacagctggggtcaccatatctgtccaggatgtc
aacgaacctccatacttccccacgaacccaaaacacatacgcttcgaggaaggcgtcccc
gctggcaccagcctaacaacgttctcagcctcagatcctgaccgattacagatgcagcag
acaatcaggtattcaaagctgaacgaccccgcagactggttgtccatcaacaggaccaat
ggacagatcatcaccacagcaatgctcgaccgggagtctatctatgtcaaaaacaatata
tacgaagccacattcctggcgacagataacggctctccagcagccagcggcacaggcaca
ctgcagatctatctgatagatattaacgacaactccccagcgctcatacccaaagagtct
cagatctgtgagcggatgaacagaaacgtcaatggtgtcaacatcaccgcagctgatgcc
gacacggaccccaacgctggacccttcgtgtttgagctgccaaactttcccaccagcatt
cgacgcaactggacgatttctcggatcagtggtgattacgcccgtctaggcctgcggtac
caggtgtatttagagcccggggtgtatgaagtccctgtgattgtttcggactcggggaac
cctccgttgtcgaacaggtcggtcatcaaagtgaaggtgtgtccctgtgatgaaaacgga
gactgcaccactctcggggccgtggcagccgccggcctgggaactggtgccatcatctcc
atcctcatctgcatcatcatactcctcagcatggtgctgttgtttgtggtgtggatcaag
cgcagagagaaggaaagacagaccaagcagctgcttattgaccctgaagatgacgtcaga
gacaacatcctcaaatacgatgaagaaggaggaggagaagaggaccaggactacgacctg
agccagctacagcagcctgactccttggagcacatcatgagcaagccacctggtgtccgc
agggtggacgaacgtcccatcatccccgagtcccagtacccaatcagagctgtggtgccc
catcctggagacatcggggacttcatccacgagggtctgcgagcagcagacaacgacccc
acagctcctccgtatgactccctgttggtgtttgactatgagggcagcggctctaccgcc
ggctccgtcagctcccttaactcctccagcacgggggaccaggactatgactacctcaac
gactggggtccccgcttcaagaagctggccgacatgtacggaggaggggatgacgattaa
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