Acanthopagrus latus (yellowfin seabream): 119023064
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Entry
119023064 CDS
T08233
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
alat01009
]
119023064 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119023064 (hdac6)
04131 Membrane trafficking [BR:
alat04131
]
119023064 (hdac6)
03036 Chromosome and associated proteins [BR:
alat03036
]
119023064 (hdac6)
Enzymes [BR:
alat01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
119023064 (hdac6)
Protein phosphatases and associated proteins [BR:
alat01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119023064 (hdac6)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
119023064 (hdac6)
Membrane trafficking [BR:
alat04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
119023064 (hdac6)
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
119023064 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
119023064
NCBI-ProteinID:
XP_036960585
LinkDB
All DBs
Position
7:297808..323212
Genome browser
AA seq
1142 aa
AA seq
DB search
MKLVTWFVQPLCALVTQGAQVEGLMLRPLTQRLVDVMSAGSEMSSGPSGPSGSGLKSVRR
SPRLSPQCSGSKGGQEEKKGGHSLQEVKRRGRMERSRDEEEEVNNRLKTLDLSCRSVASG
TGLVYSEIFTHHKNLWDSSHPESPDRVTSIMEELQRQELLSHCVRVQPREATEEELQLAH
MKHYVDLMKSTQTMTESELHTLSEKCDSVYIHPESFQVAVLAVGSVLQLVDRVVTSELRN
GFAVIRPPGHHAQSNESNGFSLFNNVAIAARYARTRLSVSRVLIVDWDVHHGQGIQYLFQ
EDPSVLYFSVHRYEGGSFWPHLPESDSQFVGSGRAEGTNINLPWNQTRMTDADYITAFQQ
LLLPVAHEFQPQLVLVSAGFDAAVGDPKGEMCVSPQCFHILTHMLMSLAEGRLVLALEGG
YNLQSTAEGAAACVRALLGGACPPLTPPTAPSDSALQSISRAVSALYPHWACLQTLEGSS
LANGRVIRATVNEQSTKPTVPTPSVAIATGLVYDERMMEHLNMWDRHHPEQPQRIFKIFS
KHEQLGLVDRCRRVPARLATEEELSRCHSVQHIEQMKATAVMKPRDLHKLGSDFNSIYIN
NQSFQSALLAAGGCCSAVDHILTGQVNNGVAIVRPPGHHAERDYPCGFCFFNTAALAARH
AQKVSHGAPLRVLILDWDVHHGNGTQHMFEDDDSVLYVSLHRYDNGTFFPSSEDAAPDRV
GVSKGAGFNVNIAWSGGRMGDSDYLAAFHHVVMPIATEFNPGLVLVSAGFDAARGDPLGG
YNVTPEGYAHLTHLLMSLAGGRVLLILEGGYNLTSISDSMAMCTSVLLGDPPPSLMTPLP
PPHRSAMTTINEVIQQHAPYWRSLRIHIPESVRVSLPALKHRGKRSSKGKGRMSEESRVD
RPLLPPTGQEDLTTEPNLEHLMQGFASLDISQTSTIHTPATSTAVGGARPKVRLNPELTC
DGEVKAESGEVTPEQSQSAEAAAVAVSESVASRDVATGGAGAEPETEGACGWSKTQTSLE
LTCGGQTDAPLYVVDPLSWCPHLDAVKPLPRSGIDVSLPCQDCGSDAENWICLTCYQVFC
GRYVNEHMVTHGVVSEHPVVLSFSDLSVWCYLCEAYVHNQTLFQAKNSAHWAKFGEEVPP
WS
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgaaattagtgacttggttcgttcagcctctctgtgcgctcgtcacacagggtgctcaa
gtggaggggttgatgctccgcccactcacacagcggttggtggacgttatgtcagctgga
tcagagatgtcatctggaccttcaggtccttcaggatctggactgaagtcagtcagaaga
tctcctcggctgtctccacagtgcagtggcagtaaaggaggacaggaggagaagaaagga
ggacacagtctgcaggaggtgaagaggagaggaaggatggagaggagcagagacgaagag
gaggaggtgaacaacagactgaagacgctggatctgtcctgtaggtccgtggcgtctgga
acaggtctggtttattctgagatcttcactcatcataagaacctgtgggactccagtcat
ccagagagtccagacagagtgacgtccatcatggaggagctgcagagacaggagctgctg
tctcactgtgtcagagtccagcccagagaagctacagaagaagagctgcagctcgctcac
atgaaacattatgtggatctaatgaagtcgactcagacgatgacagaaagtgaactacac
actctgtctgagaaatgcgactctgtttacatccatcctgagtccttccaggtggctgtg
ttggcggtgggttcggtcctgcagctggtggaccgggtcgtcacctctgagctcaggaac
ggattcgctgtcatcagacctccaggtcatcacgctcagtctaatgagtcaaacggattc
tctctcttcaacaacgtggcgatcgcagctcgatacgctcggaccagactctcagtcagc
agggtgttgatagtagactgggatgttcatcatggtcaaggcatccagtacctgttccag
gaagaccccagtgtgctgtacttcagtgtccacaggtatgaggggggatctttctggcct
cacctcccagagtctgacagtcagtttgttggcagcggtcgagctgaaggcacaaacatc
aacctgccgtggaaccagacgaggatgactgacgctgattacatcacagccttccaacag
ctgctgctgcctgtagcccacgagtttcagcctcagctggttctggtctctgctggattt
gatgctgcagtcggagatccgaagggggagatgtgtgtgagtcctcagtgtttccacatc
ctgactcacatgttgatgagtttggctgaaggtcggctcgttctcgctctcgagggaggt
tataacctgcagtcgacagctgagggcgctgcagcttgtgtcagagctctgctgggagga
gcctgtcctcctttgactccgcccaccgcaccttctgacagtgctctgcagtccatctct
cgggccgtctcagctctgtaccctcactgggcctgtctgcagactctggagggcagctca
ttggctaatgggcgtgtcatcagagcaacagtcaatgagcaaagcacaaagccgaccgtc
cccaccccatctgttgccatagcaacaggtctggtctatgatgagaggatgatggagcat
ctgaacatgtgggacagacatcaccctgagcagcctcagcggatctttaaaatcttctcc
aaacacgagcagctgggtttggttgatcgttgccgacgggtcccagctcgtctagcgaca
gaggaggagctgtccaggtgtcacagtgtgcagcacatagagcagatgaaggccacagca
gtgatgaagcccagagatttacacaagctgggatctgacttcaactccatttacatcaac
aaccagagcttccagtcagctctgctggctgctggaggctgctgcagcgctgtggaccac
atcctcacaggacaggtgaataatggcgtggcgatcgttcgtcctcccggtcatcatgca
gagagagattatccctgcggcttctgtttcttcaacacagccgcactcgccgctcgccac
gcacaaaaagtttcccatggtgcaccactgcgagtcctcatccttgactgggatgttcac
catggcaacgggacgcagcacatgttcgaggatgatgacagtgttctgtacgtctccctc
catcgctatgacaacgggacattcttcccgtcctcagaggacgctgcccctgacagggtg
ggtgtgtcgaagggggcggggtttaacgtcaacatagcgtggagcggtgggcggatgggc
gactcagactaccttgctgcatttcaccacgtcgtcatgccgattgcgactgagttcaac
cctggtctggttctggtgtcagccggattcgatgcagctcgcggggatccactcggtgga
tataatgtgaccccagagggatacgcccacctgacacacctgctgatgtcactggcaggg
ggccgggtcctgctcatcctggagggaggttataacctgacatccatctctgactccatg
gcgatgtgcaccagcgtgttgctgggagaccctcctccctccttgatgacgcccctcccc
cctccacatcgcagcgccatgacaacgatcaatgaggtcatccaacagcacgccccctac
tggaggtccctgaggatacacatcccagagtctgtgcgggtgtcgctgcctgccctgaag
catcgtggaaaacgtagttctaaaggaaaaggcaggatgtccgaggagagcagggtagac
aggccactgctgccccctacaggacaggaggacttgacgacggagcccaatctggagcac
ctgatgcagggatttgccagtttggacatcagtcaaacctcaacaattcacacccctgct
acatccactgcggtgggtggagcaaggccaaaggtccgcctcaacccagagctcacctgt
gacggtgaagtgaaggcggagtcaggtgaagtgacacctgagcagagccaatcagcagag
gctgctgctgtggcagtgtcagagtcggttgcttccagagatgtggctactggtggagcg
ggggcggagccagagacagagggagcgtgtggttggtcgaagactcagacatctctggag
ctgacttgtggaggacagacggatgcccctctgtacgtggtggaccctctgtcctggtgt
cctcacctggatgctgttaagcccctcccccgttcaggtatcgatgtctccctaccatgt
caggactgcggctctgatgctgagaactggatctgtctcacctgctaccaggtgttctgt
ggtcgttatgtgaacgagcacatggtgactcatggtgtggtctccgaacacccggtggtt
ctgagcttctcagatctgtctgtgtggtgctacctgtgtgaggcctacgtgcacaaccag
acgctgttccaggccaagaactctgctcactgggccaagtttggagaggaggtccctcca
tggagctga
DBGET
integrated database retrieval system
