Acanthopagrus latus (yellowfin seabream): 119024696
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Entry
119024696 CDS
T08233
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119024696 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119024696 (edc4)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119024696 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
119024696 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
119024696
NCBI-ProteinID:
XP_036963582
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All DBs
Position
8:26823994..26851949
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AA seq
1425 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNGTDAQSSDGQRMPSFNGELNGLLGAAGLLGSTD
RTTMSDSTRPISTDLSTAQESQIICLSGDDGSTCIPITSINVEIVASQDSSINSKARGSN
KVKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVGFAERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGSKILDQVVVHIRRPEDTPLNSHRRLIW
CPFIQDDNEDNQDDTSQTLALLHEDRAEVWDLEVLRANNSSWPIDATDLKEGLITVKGHT
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGGRPLSCLLFCDN
HKRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDLFNSSVMPSLKASLDLS
SEYLILTDVQRKVLYVMELRQDLEKGKATFTAVSEFLLTHPVLSFGVRDVTHSRLRHTEV
LPAEEESESLTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNLGSSSAVFLPHSD
SQDGFGFSDHLTDQSSDKESGNGSQTDLRKIPSLPAPTDFLSNSGTSSGVMPKLMTPDAF
MTPSTSVPASPGSSASSLTIVTAISSNSDSTNRAMDDVSHSPNRAENNSSSSLALSTSAS
SPRAASAVLLPGLENLQVGPNSICNFYKLLYTLNYIIHFFHYTALLRLQVLASPSGPLSL
DAPQVLDSPLLPPLASPTRARSPDVISSASTAMSQDMPEIASQTLQLQRGLVSSLEASPL
SALQTDSMASAASALHLLTSPRTANNNSLLPLELGGADGPVGGAVESEPRLSNTPSLLEN
ALSQENPGVGGGSSDGSVSHTPWPAAPDITRETRNSLRDNGLSDCSREESKDRHLSSPYH
RRSYHLTQNDSQDAGADQSDPDDEVASLASSSGNCGARSSHRLPVKDWKTSPRSSPKLKR
KTKKDDSESSQSRHLDSGQMNAEVQDELLMLLRSQQRELTELRGQIEAMQSSIMAQVEHV
LTNHQEQEQRRLERVLAESQNHQQQLQDQLSQQLSHTLSSVLTNRMDKVLRDEMKKTVPQ
TISKSLEPVTGQLNNTIAAKLTAVEVTLKDNVSKVVKSKNTTDAMGRAAAEAMQGPIQTA
YKDAFQSTVLPVFERGCQSMFQQINDSFKQGTQEYIQQLETHMKNRKQREQEARDPMIGQ
LQQMIDGFQSSSDQLANNITANVRAEVQHQIQMMVGNLQESILSHVQRIVKGEVSLAMKE
QQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQANILQLLQQGQLNQAFQQALSATDLNLV
LYVCETIDSQQVFGQHPCPLSQPVLLSLIQQLSSNLTTRSELKISYLEDAVMNLDHGDPL
TRDHMAAVLAQVRPKLFTFLQQEPHSPLNKRARRLMMMLQGLVNH
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaactctaacatagatatcgagggtgcgacccagcatctccgggacatcctc
aagctcgaccgtcccgggaacggcaccgatgcgcaatccagtgatggccagagaatgcca
tcttttaatggagagctgaacgggttattgggagcagcaggtcttctgggaagcactgat
cggacaaccatgtcagactctaccagacccatctccacagacctcagcactgcgcaggag
tctcagataatctgcctttctggtgacgatggctccacctgtatccccatcacctctata
aatgtggagattgttgcgagtcaagattccagcatcaacagcaaggctcgtggcagcaac
aaggtgaagattcaacctgttgcaaagtacgactgggagcacaagtattattatggcagg
ctgatagctgtttccaactccttcctggcctatgccatcagaggagccaacaaccatgca
atgattcgtgtcctgagcgtgggttttgctgagcgctccctgctgaagggcttcactgga
gctgtcacagatctggcttttgcccaccttgactcctccctgttgggttgtgtcgatgaa
gcgggtaacctgatggtctggcagctcacctgcactggaagcaagatacttgatcaggtg
gtggttcatatccgacggccagaggacacaccactaaactcccaccgtcgcctaatatgg
tgcccattcatccaggatgacaatgaggacaaccaggacgacactagccagaccttagcc
ctccttcatgaagacagggcagaggtgtgggacctggaggtcttgagggccaataacagc
agctggcctatcgatgcaacagacctaaaagaaggcctcatcacagtcaagggacatacg
cagcgagttagtgaaggagccctgtctccagatggaaccgtgttagccacagccagccat
gatggatatatcaagttttggcagatatacatagaaggggggcaggataaaccaagatgt
cttcatgaattgcggcctcacggaggacgccccctgtcctgccttcttttttgtgacaac
cacaagaggcaggacccagaggttcctttctggcggttcctaataactggagcggatcag
aaccaagagttgaaaatgtggtgcactgtttcctggacgtgtttacagaccatcagattt
tctccagatctcttcaactcctcagttatgcccagtctgaaagccagtctggacctctct
tccgagtatctcatcctcacagatgtacagaggaaggttctgtatgtgatggagctgagg
caggacctggagaaaggcaaggccactttcacagcggtatcagagtttctactcacccac
cctgtgctcagctttggggtccgggatgtcacccacagccggctaagacacactgaagtc
ctccctgcagaggaggagagcgagagcctgacaacagagggcactcaaggacccacagag
tccaagtctgggattcaaataaaactctactgtgttcacaccaagagtctgcaggatgtt
cagatctggtttcagcccaacttgggttccagctctgcagtcttcctgccccactctgat
tctcaggatggttttgggttttcagaccatctcacagaccagagctctgacaaggaatca
ggaaatggctctcaaacagacctcaggaagatcccatcgcttcctgctcccactgacttc
ctgtcaaattctggtaccagtagcggagtgatgcccaaactgatgactccagatgctttc
atgacaccaagcacttcggttccagcatctcctggcagcagtgccagcagtctgaccatt
gtgacagcgattagcagcaactctgactccactaacagggctatggacgatgtcagtcac
agtcccaacagagcagagaacaacagcagtagcagtctagcactctccacttctgccagc
agcccaagagctgcatctgcggtgctgctgcctggactggagaacctccaggtaggaccc
aactcaatctgcaacttctacaaacttctttatactctaaattacataatacattttttt
cattatactgctcttctccgtctccaggttttagcctcccccagtggtccgctttcactt
gatgcacctcaggttctggattctcccctcctgccacctctggcctctccaaccagagct
cgctcccctgacgtcatctcttcagcctccacagccatgtcccaggacatgccggagatt
gcatcccaaaccctgcagcttcagcgtggactggtgtccagcttggaggcctcacctctg
tctgctctccaaacagacagcatggcgtctgctgcatctgccctccacctactcacctca
ccacgcacagccaacaacaacagcctgttgccccttgaacttggaggtgcagatgggcca
gtgggcggggcagtagagtccgagcccagactcagcaacacgccatctcttcttgagaac
gcattatcacaggagaaccctggggttggaggagggtcctcagatggcagcgttagccac
acaccttggccggctgcacctgacatcaccagagaaaccaggaacagtctcagggacaat
ggtctgagtgactgttcaagagaggagtcgaaggacagacacttgagctccccctaccat
cgacgctcctatcacctcacacagaacgacagtcaggatgctggtgcagaccagagtgac
cctgatgatgaagtggccagcctggcatcatcctcagggaattgtggcgctcgctcctct
catagattacccgttaaggactggaaaacctcgccacgaagctcgccaaaacttaagaga
aagaccaagaaagatgacagtgagtcctctcagtccaggcacttggactctggtcagatg
aatgcagaagtacaggacgagttgttgatgctcctgcgtagccagcagagggagttaact
gaactgcgtggtcagattgaagccatgcagagctccatcatggctcaggttgagcatgtc
ctgacaaaccatcaggaacaagaacagcgcagactagagcgagttctggcagagagtcag
aatcatcagcagcagcttcaggatcagctcagccagcagctcagccacaccctcagctcg
gtgttaaccaacagaatggacaaagttctacgagatgaaatgaagaaaacagtcccgcaa
acaatctccaagagtctcgagccagtgaccggtcagctgaataatacaattgctgcaaag
ctgaccgctgtggaggtcaccctgaaggacaatgtcagcaaggtggtcaaatctaagaac
acaacggacgcaatgggccgagcagcagctgaagcgatgcaggggccaatccaaacagcc
tataaagatgctttccagagcaccgtgctgccagtttttgaaagaggctgccagtccatg
tttcaacaaatcaacgacagctttaagcaaggcacacaagaatacatccaacagcttgag
acccatatgaagaacagaaagcagagggagcaggaggcacgggaccccatgattggccag
ctccagcagatgatcgacggcttccaaagctcctctgatcagctggccaataacatcaca
gctaacgtccgggcagaggtccagcatcagatccagatgatggtgggaaatttgcaggag
tctattcttagccatgtgcagcgaattgtcaaaggggaggtgagccttgcaatgaaggag
cagcaggcggtggtcacctccagtatcatgcaggcgatgaggtcagcagccggcacaccc
gtccccacagcacacctcgactaccagacacagcaggcaaacatcctgcagctcctccag
cagggccagctcaaccaggcttttcagcaggccctgtcagcaacagatctgaacttggtc
ctgtacgtgtgtgagaccatcgactctcagcaggtgtttggtcagcacccctgccctctc
agccagccagtgctgctgtcactcatccagcagctgtcctccaaccttacaacccgctct
gagctcaaaatcagctacctggaggatgcagtgatgaacctggaccatggtgaccccctg
acaagagaccacatggccgccgtgctggcccaggtcagaccgaaactcttcaccttcctg
cagcaggagccccacagcccactcaacaagagggcgcggcgcctgatgatgatgctgcag
ggtctcgtcaaccactag
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integrated database retrieval system
