Acanthopagrus latus (yellowfin seabream): 119025340
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Entry
119025340 CDS
T08233
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
119025340 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119025340 (ddx3xa)
03041 Spliceosome [BR:
alat03041
]
119025340 (ddx3xa)
03036 Chromosome and associated proteins [BR:
alat03036
]
119025340 (ddx3xa)
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119025340 (ddx3xa)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119025340 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
119025340 (ddx3xa)
Spliceosome [BR:
alat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119025340 (ddx3xa)
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
119025340 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
119025340
NCBI-ProteinID:
XP_036964698
LinkDB
All DBs
Position
9:954707..972261
Genome browser
AA seq
738 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAVLDLNSSDGQGGGTGRRYIPPHLRNKDASKNAGNAYSAGRQCG
YSVAPINLYSPGWDSGRSNGFVNGYHDNRTNGGFGGRGPPRNDRGGRGAYRGNRGGGSFN
QPLQNAGFGSYDNKDGSWGGPSRDAAYNSFGGRSDRNKSAFFNDRGAGSRGRYERGGFAG
GGNTRWVEDSRDDDWSKPTAPNERLEHELFSGSNTGINFEKYDDIPVEATGSNCPPHIES
FHDVDMGEIIMGNITLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQ
IYTDGPGDALQAAKNNGQENGRYGRRKQYPLSLILAPTRELALQIYDEARKVAYRSRVRP
CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGF
EPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQ
KVVWVEETDKRSFLLDLLNATVIPSEVQENVTEAPEKPGKDSLTLVFVETKKGADALEDF
LYHEGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPS
DIEEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQH
KSSTRGRSKRFSGGFGARDYRQTSGGSGSFSSNRGGRNTGGHGGNRGFGGGGFGGNFYSN
DGYGGNYSHSGSVDWWGN
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgataatccacacggtctagatcagcagcttgctgtcctagac
ttgaactcttctgacggccaaggcggaggcactggcaggcgttacattccacctcacttg
agaaacaaagatgcctctaaaaatgcaggaaatgcttattccgctggtagacagtgcggt
tattcagtggcaccaataaatctctattcaccaggatgggacagtggacgcagcaatgga
tttgtgaatggttaccatgacaaccgcacaaatgggggctttggagggcgaggaccccct
cgcaatgatagaggtgggcgtggcgcctaccgtggtaacaggggtggaggctcgtttaat
caaccattgcaaaatgcagggtttggcagttatgacaacaaagatggcagctggggagga
ccttcgagagatgctgcctacaacagttttgggggacgttctgataggaacaagtcagcc
ttcttcaatgaccgtggggcaggctcaaggggaagatatgagcgtgggggttttgctggt
ggaggaaacacccgctgggtggaagactccagagatgatgattggtccaagccaactgct
cccaatgagcgcctggaacatgagcttttctctggaagcaacactgggataaattttgag
aaatatgatgatattcctgtggaagccactggaagcaactgcccgccccacattgaaagt
ttccatgatgtagacatgggggagattatcatgggtaatatcaccttgagtcgctacact
cgtcccaccccggtccagaagcatgctatccccatcatcaagtccaagagagacctgatg
gcttgcgcccagactggctctggtaagactgctgctttcttgctgccagtgctgagtcag
atttacactgatggacctggagatgcccttcaggccgctaaaaacaatggacaggaaaat
ggaaggtatggtcgccgtaaacagtacccactttcccttatcctggctcccactagagaa
ctggctttgcaaatctatgatgaagccaggaaggttgcctatcgctcacgcgtgcgcccc
tgtgtggtgtatggtggtgccgatattggccagcagattagggatttggagagaggatgt
cacctgctggtggccacacctggtcgcctggttgatatgatggagaggggcaagattggt
ctggactattgcaactacttggtcctggacgaggctgaccgcatgttagacatgggtttc
gagccacagatcagacgaattgtggagcaagacacaatgccacccaaaggcattcgacag
accatgatgttcagtgccaccttccccaaggagatccagatccttgcccgtgacttcctg
gaggactacattttcttggcagtggggcgtgttgggtctacctcagaaaacatcacacag
aaggtggtctgggtagaagaaacggacaagaggtccttccttcttgaccttctcaatgcc
acagttattcccagtgaggttcaggaaaatgtgacagaggcaccagagaaacccggcaaa
gactcactgactctggtgtttgtggaaaccaagaaaggagcggatgctttggaagatttc
ctttaccacgagggttatgcctgcaccagcatccatggagatcgatctcagagagataga
gaggaagctctgcatcagttccggtctggacgttgccctatcttagtggctacagctgtg
gctgctcgaggcttagacataagcaatgtgaagcacgttattaacttcgatttgcccagt
gacattgaggaatacgttcaccgtattggccgtacgggacgtgtgggcaaccttggtctg
gccacgtcgttctttaacgacaaaaacagcaacataaccaaagatttgctggacattttg
gtggaggctaagcaagaggttccctcctggcttgagagcctggcctatgagcatcagcac
aaaagcagcacccgtggacgctctaagaggttctctggcggttttggagctagagactac
cgtcagacatctggtggctctggaagcttcagtagcaaccgtggagggcgtaacactgga
ggtcatggcggaaaccgtggctttggtggaggtggctttggtggcaacttctacagcaat
gatggctatggaggaaattacagccactctggtagtgtggattggtggggcaactag
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