Acanthopagrus latus (yellowfin seabream): 119025430
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Entry
119025430 CDS
T08233
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03015
mRNA surveillance pathway
alat04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119025430 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
119025430 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alat03021
]
119025430 (sympk)
03019 Messenger RNA biogenesis [BR:
alat03019
]
119025430 (sympk)
Transcription machinery [BR:
alat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119025430 (sympk)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
119025430 (sympk)
U7-dependent histone pre-mRNA processing factors
119025430 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
INTS1_R4
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
119025430
NCBI-ProteinID:
XP_036964876
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All DBs
Position
9:complement(26398627..26409189)
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AA seq
1220 aa
AA seq
DB search
MELSAEEGETPHDAIDMTTSERVVDLLNQAALMTTDDKLTVLKQVQELIINKDPSLLDNF
LDEMIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLLKDDSVNVVKKAILTL
TQLYKVTLQWLVRSKAVTERQEACWDLVTQMKGDVLALLDSENDGVRTHAIKFTESLIIT
LSPRTSDSDVPKRQEGDTSLDKVPKDHSYIRYDVLCEEGKNALERLLKFMVHPAISSINL
TTALGSLATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHPC
SLEFQGQISTLLLDLGMPQSEITRSTPAPREQRKRPRHEQYTEGKKVKMEPTLIEDDEDK
EEPAPLSVPKPAAVPVAQSAIDLTAEFLHPLLNPENVANLVLISMVYLPDIMPASFQATY
TPVESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKAREDDAGKEEGSEDGPGAKDQLIK
RKFPAVMVGQAISVVGGYTEKTPAEAAPTVKRLPEPILPTTQTKMAGASGRKKVFRLSDV
VQPLSEAQIEKLTSRAVKRILHSEKSIAQSGMSHVRVKLLSRLVTQFEGMMKEDVLEFIL
DDIRTRSDLAFSLLYQEYNSYLSQLPSGLLDSYDHCLYTLLSGLQEKPEQRDGLFTKLVL
EAPVITESALEVIRRYCEDESRVYLGMTTLKELIVKRPSRQFQYLHVLLDLSSHEKEKVR
TTALAFLKRMYEKDQLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVAAPWTEDTVRQ
CLFLYLSLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCP
KGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQALPK
LIKLNPIVVKEVFNRLLGTQHSEGSSSVSPLTPGDLLIALHNIDSTKCDMKSIIKATNLC
FGERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQVW
KYPKVWEGFVKCCQRTKPQSYSVLLQLPPAQLTSVFERCPEMREPLLQHVHSFTPHQQAH
IPASIMLVLEGEKKPEPKPVEPVVEKEMESDPAPAEEEAPAAELPESEKEVQQHAADTKD
EEEPMEQEESEPVIQEEAAETVSQEDERTREKETPSPQPEPAEEEMETTQPELSEDQEPE
KDAEAVVAAPDTGSGSEDVE
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggagctttcagccgaggagggggagacccctcatgatgccatcgatatgaccaccagt
gaaagggtggtggatcttctgaatcaggccgccctgatgacaacagatgacaagctaacg
gttctgaaacaggtccaggagctgattatcaataaagatccttctcttcttgacaacttc
ttggatgagatgatcgcctttcagactgacaagtccattgaagtgagaaaatttgtcatc
ggcttcattgaggaagcatgtaaacgagataatgagctccttctcagactgatcgccaat
ctgaacatgctgctgaaggatgacagtgttaacgtggtgaagaaagcgattctcactctc
acacagctctacaaagtcactctgcagtggttggttcgctctaaagcggtgacagagagg
caggaggcatgctgggatctggtcacgcagatgaaaggggacgttctggctctgctggac
tctgaaaacgacggtgttcgcactcacgccatcaagttcacagaatcattaatcatcact
ctgtcaccacggacctccgactctgacgtccccaaacggcaggagggcgacaccagcctg
gacaaagtccccaaagatcattcatatattcgttatgacgtcctgtgtgaggagggtaag
aatgctctggagcggctgctgaagttcatggtccacccggccatctccagcatcaacctc
accacagcactcggctctctggccaccatcgcccgtcagaggccgatgttcatgtcagag
gtcgtgcaggcgtatgagacgctacatgccaacctgccacccaccctggccaagtctcag
gtcagcagcgtgagaaagaacctgaagttgcacctggtggcggtcttgaagcacccatgc
agtctggagttccagggtcagatcagcaccctgctgctggacctggggatgcctcagagt
gaaataaccagatctacacctgcaccaagagagcagcgcaaaagacctcgtcacgaacaa
tacacggaagggaagaaggttaagatggagccaaccctgattgaagatgacgaggacaaa
gaagagccagctcctctctcggtccctaaaccagctgctgttcctgtcgctcagtctgcc
atcgacctcacagctgagttcctccacccgctgctcaaccctgagaacgtcgccaacctg
gtgctcatcagcatggtgtacctgcctgacatcatgccagcatccttccaggccacatac
acacctgttgagtcagcaggtactgacgcccagatcaaacatctagccaggctgatggca
acacagatgactgcagctgggatcggtccaggacttgagcagtgcaaagccagagaagac
gacgcaggcaaagaggaaggcagcgaggacggccctggtgctaaagatcagctcatcaag
cgcaagtttccagcggtgatggtgggacaggcgatctctgtggtgggaggttacacagaa
aagactccagcagaggcggctccaactgtcaagaggcttcctgaaccgattctccctacg
acacagaccaagatggccggtgcgagcgggaggaaaaaagtgttcaggttgtcggatgtc
gttcagccgctatcagaggcacagatcgaaaagttgacctccagagcggtcaaacgcatc
ctgcactcagagaagtcgatcgctcagagtggcatgtcccatgtcagagtgaagttgctc
tccagactcgtgacgcagtttgaggggatgatgaaagaagacgtgctggagttcattctg
gacgacatccggacgaggagcgatttggccttttctctcctctaccaggagtacaacagt
tacctcagccagctgccgtctgggctgctggacagctacgaccactgtctgtacaccctg
ctgtcaggcctgcaggagaagcctgagcagagggacggacttttcaccaaactggtgctg
gaggctcccgttataacagaatcagcgctggaagtgatccgacgttactgtgaggacgag
tctcgggtgtatttgggcatgacaactctgaaggagctcatcgtcaaacgaccatcgagg
cagtttcagtacctgcacgtcctgctggatctcagctcacatgaaaaagagaaggtgcgg
acgaccgccttggcttttctcaagcgtatgtatgagaaggaccagctcagggactacatc
gagaagtttgctctgaactacatgcagctcctggtccaccccaaccctccgtctctgctg
ttcggagctgacaaagacacagaggtggctgctccctggactgaagacacagtgagacag
tgtctcttcctctacctgtctctgctgcctctcaaccaccggctggtccacgagctggct
tctgtctacacggaggccatcgctgacatcaagcgcagcgtgctgagagcgatagagcag
cctatccgtgggatggggatgaactcacctgagctgctgctgttggttgaaaactgtcct
aaaggagccgagactttagtgactcgctgtctgcacattctgacagataaagtgcctccg
tctccagagctggtggagagagtcagagatctttaccacaaacgagtgccggatgttcgc
ttcttgattccagttataaacggactagaaaagaacgaagtcatccaggctctccccaaa
ctcatcaaactcaacccgattgtagtgaaagaggtgttcaaccgtctcctcggcactcag
cacagtgagggaagttcatcggtttcccctctgactccaggagatctgctgatcgcttta
cacaacatcgactcaaccaaatgtgacatgaagtcgatcattaaagctaccaacctctgc
ttcggggagaggaacgtgtacacgtcagaggttctggcagtggtgatgcagcagctgatg
gagcagagtcctctccccatgctgctcatgcgcaccgtcatccagtccctcaccatgtac
ccccgactgggaggcttcgtcatgaacatcctgtcacgcctcatcgtcaagcaggtgtgg
aagtatcctaaagtgtgggagggattcgtgaagtgctgtcagaggacgaagcctcagtcg
tacagcgtcctcctgcagctgccgcctgctcagctgaccagcgtgtttgaacgctgccca
gagatgagggagcctcttctgcagcacgtccactccttcacacctcaccagcaagctcac
atcccagcctccatcatgttggtcctggagggagagaaaaaaccagaaccgaaacctgtg
gagccagtcgtggagaaagagatggaatcagatcctgccccagctgaagaagaggctccc
gctgcagagctgccagagtcggagaaggaggtccagcaacatgcagccgacacaaaagac
gaagaagaaccgatggagcaagaagagtctgaaccggtgattcaggaggaagctgctgaa
actgtttcacaggaggatgagagaacgagagagaaagagacaccatcgcctcaaccagaa
ccagcagaggaagagatggagacgactcaacctgaactttcagaggaccaggagccagaa
aaagatgctgaagctgtcgtagcagcacccgatacaggaagtggcagcgaagatgtagaa
tga
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