Acanthopagrus latus (yellowfin seabream): 119025536
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Entry
119025536 CDS
T08233
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alat04147
]
119025536 (col18a1a)
00535 Proteoglycans [BR:
alat00535
]
119025536 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119025536 (col18a1a)
Exosome [BR:
alat04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119025536 (col18a1a)
Proteoglycans [BR:
alat00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
119025536 (col18a1a)
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119025536 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
DAG1
Motif
Other DBs
NCBI-GeneID:
119025536
NCBI-ProteinID:
XP_036965074
LinkDB
All DBs
Position
9:25011473..25089318
Genome browser
AA seq
1437 aa
AA seq
DB search
MRTQFGVLLLLALWVVHTDAWFWSWTGPTTLPPTVDNEGSGSQAGSGEPPSENIARTGLE
IIDEGHGIQKVVQTLDETTQAPRLTTTTQPENEHASEKGAAGISSRKHKPEDSGVSLLQL
IGDPPPSEIRRIYGFDNIPGYVFGPDANTGQLARAHLPSPFFRDFALIFYLKPTSDRGGV
IFSVTDASQQIMYVGVKLSAVQGGNQNVILYYTEPDSQQSYEAARFLVPSMRDTWTRFAI
AVRDEKVMFYLNCDADPQVTRIERSPDEMELEAGAGVFVGQAGGADPDKFLGMIGELRVV
GDPRAAERHCEEDEDDSDMASGEGSGYVESKPPKPAVDNPRWTTTPPPSRPIQQPPLTKK
EEVSVTRETGPSGPKGEKGDRGDRAEKGERGPIGPKGESGFGLSSRDRARGEKGEPGEKG
LKGSAGFGYQGTKGEPGPPGPPGPAGPPGPATEFSVGSDGSVSSRGPGPRGPPGPPGSPG
PKGPPGNDGEPGDPGEDGKTGPEGPPGFPGTPGDTGPKGEKGDRGDGQPGPRGPPGPPGP
PGPGLRSTFVDMEGSGFPDLDSIRGLPGLPGPPGPPGPPGPSTATTGLSSGAFGPPGKDG
APGQPGLAGLPGTDGLPGAPGPKGEKGDSGELGLPGAIGQKGAQGEPGVPGTPGEAGLAG
LPGPMGPVGPPGPPGPPGPSYRVGFDDMEGSGGGFGNGLPGVRGPEGRQGSPGLPGLPGK
PGLPGLPGQKGSEGSVGRDGQPGLDGFPGPKGPKGDKGDKGETGDPGRDGTGHPGPPGPP
GPPGQIIYRTSDNVDIAAGGAGPQGGPGLPGQAGFPGPIGPKGDRGDPGPVGYGVKGEKG
EPGLIVGPDGNLLSLEGLTGVKGDRGPAGPVGPTGPYGPPGPKGEIGMPGRPGRPGVNGY
KGEKGDPGVGSGYGYPGVPGQPGPPGPPGPPGPAIPIDRFSRYDDASRNYPATKGEKGER
GDRGIPGIPGAASNFDIYAFKNELKGERGETGVKGEKGEPGGGYYDPRFGGVQGPQGPPG
KPGLPGPKGDPVMGPPGPQGPPGPPGVGYDGRPGPPGPPGPPGPQSPSLPGAGAYRPNHP
VSVPGPPGPPGPPGIPALNSGVSVLRSYDVMIATARRQAEGSLIYIIDKADLYLRVRDGL
RQVMLGEYSPFFRDLENEVAEVQPPPVILYPQSQDQSQSNGAGHYSQGGSSIRPIEPPPQ
PPVEPRYPPQYDPRFPDPRHTGQTDGGLDTEQPEKRYLVTRQRRPSPPVVHPVGHADTSG
SGLHLIALNAPQSGNMRGIRGADFLCFQQARAIGLKGTFRAFLSSKLQDLHTIVRRSDRD
SLPILNLKDQVLFNSWESIFGDDASKMRENVPIYSFDGRDILRDSAWPEKMVWHGSSNKG
HRQTDHYCETWRAGDRAVTGLASSLQSGHLLQQSSTSCSGSYIVLCIENAFTTHSKK
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgaggacccagtttggagttttacttttgttggccctgtgggtggtccacactgatgct
tggttctggtcctggactggtcctacaactttgcccccaacagtggacaatgagggatct
ggcagtcaagcaggtagtggagaaccaccatcagagaatattgcaaggactggactggag
ataattgatgagggacatggcatccaaaaggttgtgcagactttggatgagaccactcag
gctcctcggctgaccaccacaacacaaccagaaaatgaacatgcttcagaaaagggagca
gctgggatttcatcacgcaaacataaacctgaagacagtggggtctccctgctgcagctg
attggggaccctcctccaagtgagatcaggcggatctacggattcgacaacatccccggg
tatgtctttggtcccgatgccaacacaggccagttggcccgcgcccacctgccgagcccc
ttcttcagagactttgcccttatcttctacctgaaacccacctcggacaggggcggcgtc
atcttctccgtcacagacgcctcacagcagatcatgtatgtgggtgttaaactgtccgcc
gtgcagggcggcaaccagaacgtcatcctgtactacacagagcccgactcccagcagtcc
tacgaggcggccaggttccttgtaccctccatgagggatacttggactcgttttgccatc
gctgtgagggacgagaaggtgatgttctacctcaactgtgacgcagaccctcaggtgacg
cgcatcgagaggtccccggacgagatggagctggaggctggagcgggagtctttgtcggg
caagctggaggagctgatccggacaagtttctggggatgatcggtgagctgagggtggtg
ggagaccctcgtgctgccgagaggcactgtgaggaggacgaagacgactccgatatggct
tcaggtgaaggaagtggctacgtggaatccaaacctccaaaaccagccgtggacaatccc
agatggacgacgacccctccaccttcccgacccattcagcagccaccgttgaccaagaag
gaggaagtgtcagttacaagagagacagggccaagcgggccgaaaggagaaaagggtgac
cgaggggacagagcagagaaaggagaacggggtcctatcgggccgaagggagaatctgga
tttggcttgagctcacgagatagagcccgtggagagaagggggaaccgggggagaaggga
ttaaagggcagtgcaggctttggctaccaaggaacgaagggagagcctggacctcctggg
ccccccggtcccgctggccctccagggcccgccacagagttttcagtcggcagtgatggc
tcagtttcctccagaggccccggaccccggggaccacctggaccaccaggttctccgggc
cccaaaggaccaccaggaaatgatggagagccaggcgatcctggtgaggatggaaaaact
ggtcctgagggacctccaggcttccctggcacccctggtgacactggacctaaaggagag
aagggagaccgtggagatggtcaacctggcccaaggggacctccaggacctccaggaccc
ccaggaccaggactcagatctacttttgtggacatggagggctcagggttccccgatctg
gactctattcggggattgccaggcctcccaggtccccctggtccccctggtcctcctggt
ccctcaacagcaaccacaggattgagctctggggcattcggaccaccaggaaaggatgga
gcgcccggtcaaccgggcttggcgggtcttccgggtactgatggcctcccaggtgctcct
ggtcccaagggagaaaagggtgattcaggcgagcttggtcttccaggagcaattggacag
aagggagctcaaggagaacctggtgtacccggaactccaggagaggccggactggctggt
ctgcctggacccatgggaccagttgggccacctggacctcccgggcctccaggaccaagt
tatcgtgttggatttgacgacatggagggctcgggtggaggcttcggcaacggacttcct
ggagtcagaggaccagaaggaagacagggatctcctggtctgcctggacttccaggtaaa
cctgggcttcctggtttgccgggtcagaagggcagtgaaggttctgtaggaagggatgga
cagccaggattggacggcttccctggacctaagggaccgaaaggtgacaaaggtgacaaa
ggagagacgggtgatccaggtcgagatggaactggacatccaggtccgcctggcccacct
ggcccaccgggacaaatcatctacaggacttctgacaatgtggacattgctgctggaggt
gccgggcctcagggaggacctggtttacccggtcaggctggattccctggtcctattgga
ccaaagggtgacagaggagaccccggccctgtgggctacggagtgaagggtgagaagggt
gagccaggcttaatagtcggacctgatggaaatcttctgtctctggaggggctaacaggt
gtgaagggagacagaggaccagctggacccgttggacccactggcccgtatggacctcct
ggaccaaagggtgaaattggaatgcctgggagacccggtcggcctggtgtaaatggatac
aagggtgagaaaggagatccgggtgttggttctggctacggctacccgggcgtccctggc
caaccaggcccacctggaccacccggacctcctgggcccgccattcccattgatcgcttc
agtcgctacgacgatgcgtcaaggaattacccagcgaccaaaggagaaaaaggagagcgt
ggtgatcgcggtattccaggaattccaggagcagcctctaatttcgacatttacgcattc
aagaatgaactgaagggagagcgtggagagacaggggtgaagggagagaagggagagccc
ggtggtggatattatgacccacgttttggaggagtgcaaggtccacaagggcctcctggc
aaacctggcctgccgggtccaaaaggagatccagtaatgggtcctcctggaccccagggg
ccaccagggcctccaggggttggttacgatgggcgtccaggtcctccaggaccacctgga
cctccaggaccccagtctccctcacttcctggagctggagcatacagacccaatcaccct
gtcagtgttcctggacctccaggtcctcctggtccacctggaattcctgctctcaactct
ggggtcagcgttttgaggtcatatgatgtaatgattgcgacggccagacgtcaggcagag
ggcagcctcatctacatcatagacaaagcagacctgtatctgagagttcgcgatggactg
cgacaagtcatgctcggagagtacagtcccttcttcagagatctggagaacgaggtggca
gaggtccagccccctcctgtgatcctgtaccctcagtcccaggaccagtctcagagcaac
ggagctggacattactctcagggtggctcctccatacgacccatcgagccgccacctcag
ccacctgtggagcccagataccctccacagtacgaccccagattcccagacccgaggcat
acgggtcagacagatggaggattagacaccgagcagcctgagaagagataccttgtgact
cgtcagcggagacccagcccgcctgtagtgcatcctgtcggtcatgcagacacatcagga
tcaggactacacctcatcgccttgaacgcccctcaaagcggtaacatgcgagggatccgc
ggggcagacttcctgtgcttccagcaggctcgcgctatcggcctgaaggggaccttcaga
gcgttcctgtcctccaagcttcaagacctccacaccatcgtccgcaggtcggacagggac
agcctacccatcctgaacctcaaggaccaagtgttgttcaacagttgggagtctatattt
ggtgacgacgcgagcaaaatgagggagaacgtaccgatctactccttcgatggtagagac
atactcagggacagcgcatggccagagaaaatggtctggcacggatcgagcaacaaaggc
caccggcaaacagaccactactgcgagacgtggcgagcaggcgaccgcgctgtgaccggt
ctggcatcgtcgctacagagcggccacctcctgcagcaaagctccaccagctgctccggc
tcctacatcgtcctctgcattgagaacgccttcacaacacactccaaaaaataa
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integrated database retrieval system
