Acanthopagrus latus (yellowfin seabream): 119026342
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Entry
119026342 CDS
T08233
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alat03400
]
119026342 (pms1)
DNA repair and recombination proteins [BR:
alat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
119026342 (pms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HATPase_c_3
HMG_box
HMG_box_2
HATPase_c
THRAP3_BCLAF1
HMG_WDHD1
DUF7648
Motif
Other DBs
NCBI-GeneID:
119026342
NCBI-ProteinID:
XP_036966530
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Position
9:complement(26257481..26275563)
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AA seq
916 aa
AA seq
DB search
MKQLPPDTVRLLSSSQVITSVLNVVKELMENSLDAGASSIDIKLENYGLDRIEVRDNGRG
IKAADTPVMAVRHFTSKICSHEDLERLETYGFRGEALGSICAVAEVSVITKTQEDDISTH
YTLNFTGEIVSQKPSHLGQGTTVSVLKLFKNLPVRRQYYSSTKKCKEEVKKVQDLLTAYA
IIKPDLRLTLVHNKVVVWQKAKVADHRSALIATLGPSAVANLLPCHHHQEQPEIVLEGFF
PKPGADHSSTSSSNPDKTFIFINNRPVNHKEIMKLLRQHYIAQYPDDSARNRYPTLMLKV
TVPPSSVDVNLTPDKTQVLLQDKEAVLTAVEAFLVSLYGYRPRGDPPAETQLVREKCPSP
SSPLQADASRLDSEEVLEVDVDLSKVLKDAPKHGDTAVRTDAPLDPLTPNSSSSSIAEDW
IVNQIPAGPESSFSLYDDQTAETCSANKSPERLQDETVSGAETNKDQLSAEDWSRGTALT
DPVSGEPLQPVRIHQPSKDNHPDSDEVKSPSSSNKKMLNAITEKRAALTAYDLISNRAMR
APLSPAALFEKEARAEVLREKPTASLQDISDAVHERWKNLREEDRKKYEVKAKKHLDHHD
QRTKLASAEGPTETGTIAPRVHAQGQKRKAPLSNQKLLDELFSAQPQKKSRSLATAPKPS
LPLPCSVPSLRLQLQRLSSQSSAVPRGLRLVNRLASQSAWVILCGQRLMLLNPFRVEEAL
LFKRLLENNILPAVSLQNPIQLTDGSLGGAEYIEALCNMEKQSPELNGGAFFSDPRLVAN
GFKIHLTPGLTSAERHLEVTAMADYVPFLGVEDLREILAAVLHRKATTVKECRPLKVTNY
LQGEAVRLARQLPTNLSREDVEETLLRMEQQLGENKRTCIHGRPFLQHLSNVPNTDEEAE
ALQKLRPLELKEVDTL
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagctgcctccagacacggtgcggctgctgtccagctcccaggtcatcacctcc
gtgctgaacgttgtgaaggaattgatggaaaattcgctggacgctggagcgtcaagcatc
gacataaaactggagaactacggtttggaccggatagaagtgcgcgacaacggccgtgga
atcaaagctgcagacactcctgtgatggccgtcagacacttcacttcaaagatctgcagc
cacgaggacctggagcggctggagacgtacggcttcagaggagaggcgctgggctccatc
tgcgccgtggccgaggtgtccgtcatcacaaagacacaggaggatgacatcagcacgcat
tacacgctcaacttcacaggggagattgtttctcagaagccgtctcacttgggtcaaggt
acaacagtgagcgtactgaagctcttcaagaatctccccgtcagacggcagtactactct
tctaccaagaagtgtaaggaggaagtgaagaaagtgcaggacctgctgacggcctacgcc
atcataaaacctgacctgaggctcacgctcgttcacaacaaggtggtggtttggcagaag
gccaaggtggccgatcacagaagtgccctcattgctacgctggggcccagcgccgttgcc
aacctgctcccctgccaccatcaccaggagcaaccagagattgttttggagggctttttt
ccaaaacctggagcagatcattcctccacaagttcatcaaaccctgacaagacattcatt
ttcatcaacaaccgacccgtcaaccataaagagataatgaagctgttgcgtcaacactac
atcgctcagtatccggatgactcggcccgaaaccgttatcccaccctcatgctcaaagtg
acggttccgccctcttcagtcgacgtcaatctgacgccagacaagacccaggttctcctt
caggacaaggaggctgtcctgaccgcagtcgaggcttttctggtttctctctacggctat
cggcctcgtggtgacccgccagctgagacgcagctcgtccgtgagaagtgtccctcgccc
tcaagtcctctacaggctgatgcttcacgactggacagtgaggaggttttagaggtcgat
gttgatcttagcaaggtcctcaaagatgctcctaaacatggtgacacagcagtaagaact
gatgctccactggaccctctgaccccaaacagcagctcctcttctatagcagaggactgg
attgtcaaccagatcccagcaggaccagagtctagtttttctctctatgatgatcagaca
gcagaaacatgttcagctaacaaatctcccgagagactgcaggatgaaaccgtttcaggt
gcagagacaaacaaagaccagttatcagctgaggactggagccgagggacggctttgacc
gaccccgtatcaggagaaccccttcagcccgtcagaatccaccaaccctcaaaggacaat
cacccagactcggacgaggtcaagagtccgagcagctcgaacaaaaagatgctcaacgcc
atcacggagaagcgtgctgctctgacggcctacgacctgatcagcaaccgcgccatgagg
gcaccgctgtctcccgccgccctgttcgagaaggaggccagagccgaggtcctgagggag
aaacccacagccagcctgcaggatatcagcgacgccgtccacgagaggtggaaaaatctg
agggaggaagaccgtaagaagtatgaggtgaaggcaaaaaaacacctggatcaccacgac
caaaggaccaagctggcctctgctgaaggccccacagagaccggcacgatcgcaccgagg
gtccacgcacagggccagaaacgcaaagccccgctgtccaaccagaagctgctggacgag
ctcttctccgcacagccccagaagaagagcaggagcctggcgacggcaccgaagccctcg
ctgcccctcccctgcagcgtgccttcccttcggctgcagctccagcgcctttcatcccag
agcagcgcagtgccacggggcctccgtcttgtaaaccggctggcctctcagagcgcctgg
gtcattttatgtggtcagaggctcatgttgttaaacccatttcgagtggaggaagccttg
ctgtttaagagactcctagagaataatatacttccagcagtgagtctgcagaaccctata
cagttaacagatggaagtctagggggggctgaatatatcgaggctttgtgcaacatggag
aagcaaagtcctgagctgaacggaggagccttcttctccgatccaagacttgtggctaat
ggttttaaaatccatctcactccaggcctcacgtcagccgagagacatctggaagtgacg
gcaatggcagactacgtgcctttcctcggcgtggaggacctcagggagatcctcgctgca
gttctgcacaggaaggccacgaccgtgaaagagtgccggccacttaaagtgacaaactac
ctacaaggggaagcagtgcgacttgcccgtcagttgcccacaaatttgtcccgggaagac
gtggaggaaaccctgctcaggatggaacagcagcttggtgagaacaaacggacctgcatc
cacgggcggccgtttctccaacacttatccaatgttcctaatacggacgaggaggctgaa
gctctgcagaaactgaggcctttagagcttaaagaagtagacactctataa
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