Acanthopagrus latus (yellowfin seabream): 119026617
Help
Entry
119026617 CDS
T08233
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04510
Focal adhesion
alat04512
ECM-receptor interaction
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119026617 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119026617 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119026617 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alat04147
]
119026617 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119026617 (col4a5)
Exosome [BR:
alat04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119026617 (col4a5)
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119026617 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119026617
NCBI-ProteinID:
XP_036966929
LinkDB
All DBs
Position
10:complement(4492768..4535619)
Genome browser
AA seq
1692 aa
AA seq
DB search
MSQDAKSPRQLAAPLLLFLALCVAVQRSDSMSCHGCSGSKCECPNTKGTKGERGFPGLTG
PPGVPGFPGPEGPIGPRGEKGSDGPMGPGGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPG
PRGVPGCNGTKGERGLPGGGGIPGQQGRPGPPGLPGPKGDPGDVISTNRFGEKGAVGLPG
LPGVPGTPGPAGLQGPLGPPGPRGYEGRPGPPGPPGPKGNMGLNFQGPKGEKGDPGLPGP
PGPPGQVGEQKRPPETEIQRGDKGDPGVPGPRGDPGYPGPPGPSGGQKGDKGEPGEAGKR
GKPGKDGDPGSPGFPGVKGESGLPGPPGRDGERGFKGEPGYPGPPGAVIGSQTGTQPGPK
GDSGYPGTPGSKGERGPQGLTGPPGAPGIPAIGGGGQPGQPGFPGERGQKGEAGVPGVSL
PGPPGRQGAPGPQGSPGLPGPPGFSTAGQNCIPGEPGRPGVQGERGYPGETGQKGEKGDT
CVNCYGETSALPGPQGPPGPPGFPGNPGPQGVKGDRGFPGIPGGVGPSGAPGPQGSPGYP
GEKGDPGDAISVSGVRGEKGDTGFPGPPGLPGLDGRPGRDGLPGSPGPKGAPGSLQVKGE
RGLPGDPGSPGIPGDRGPPGPPGFGPQGPSGEKGIQGVSGRPGGPGAPGAKGEPGLSVAE
KGLPGPRGQDGEPGLPGSPGNPGQPGQPGFPGLPGAKGDPGLPGIGLPGPPGAKGFPGIP
GQPGSPGGPGRPGVDGLPGQPGIPGSKGEPGFGLPGPPGLPGVPGSKGFPGPKGDSGFPG
SPGSPGRSGFDGAPGAKGDPGIPGTPGARGPPGPTTIGSVGQPGPPGPPGPMGPPGEKGF
PGSNGAKGDPGPPGLDIPGLPGDRGTPGFPGSPGPPGTPGPPGGPGRDGLPGLPGTKGDM
GPMGPPGPSGGPGGPGGPGAPGFKGEPGFPGRDGTPGGPGGKGERGDPGVMGPPGATVTS
AVTKGDKGDPGLPGSPGFPGQKGISGLSGDPGLPGSDGRPGLPGPPGPKGDAGIPGGPGS
PGGPGPKGAMGEMGIPGPAGQKGLTGQPGRSGTPGQPGGPGFPGAKGEPGSAGVGPPGPA
GLKGEPGQPGFPGAPGLKGTPGSPGLPGLPGGPGAKGDPGLPGFQGPPGVSGPKGLDGGP
GAPGLSGAPGRPGEPGRPGGPGLPGEKGQAGRDGIPGPAGVKGDPGLPGYGGPGPSGLPG
LPGAKGDPGPPGGPGTPGFPGTKGEAGFPGSPGSSGNPGPPGPPGLALQGPKGLQGPPGP
PGRAGPSGPPGPPGPEGVRGPAGSGGVKGEKGIPGAPGQPGFAGSKGDPGTPGFPGSPGL
PGATGVKGDIGLPGVPGFPGPKGDPGSPGGAGLRGDPGEVGPTGPPGDPGVPPAPIVVKG
ERGPPGPQGQPGSRGLPGSQGRDGLPGQPGDPGDPGLEGPPGFSGPPGRKGDSGPAGQPG
QQGYPGPPGSDGPQGSPGLPGSVSAAHGFLITRHSQGQDVPFCPEGTNPIYDGYSLLYVQ
GNERAHGQDLGSAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIT
GESIKPFISRCSVCEAPAMVIAVHSQTIQIPDCPDKWSSLWIGYSFMMHTSAGAEGSGQA
LASPGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQSETFKAGNLRT
RVSRCVVCMKST
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagacgcgaagagcccgcgacagctcgccgcgccgctgctcctcttcctcgcc
ctgtgcgtcgcggtgcagcgatccgactctatgtcttgccacggatgttcgggatccaaa
tgtgagtgtccaaacacaaaaggaaccaagggtgagcggggttttccaggtctcaccgga
cctccaggagtcccaggattccccggacctgaagggcccattggacccagaggagagaag
ggtagcgatggacctatgggaccgggtggtccgaaaggaataagagggccgtctggactg
ccaggcttcccaggaacgccaggacttccaggtctgcccgggcaggacggacctccgggg
ccgagaggagtgccaggatgcaacggcacaaagggtgagaggggtctcccaggaggagga
ggaatccccggacagcagggacggccgggtccacctggtcttccaggaccaaagggcgac
ccgggcgatgtgatctccaccaaccgcttcggagagaaaggagcagtggggctgcccgga
cttccaggagttcctggcacacccggacccgccggtttacaggggccactcggccctcca
ggacccagaggctacgagggtcgtccaggtcctcccggtcctcccggaccaaagggaaac
atgggactgaacttccaaggacccaaaggagagaagggtgatcccggtctgccaggacct
cctggtcctcccggacaagtgggagaacagaagaggccacctgagacggagatccagaga
ggagacaagggcgacccaggagttccaggaccaagaggcgatccaggctatccaggacct
cctggtccttcaggaggacagaaaggagacaagggagaaccaggagaagcaggcaaacgc
ggcaaaccaggcaaagatggagaccctggttctccaggattccctggagtcaaaggagag
tcaggccttccaggtcctccaggcagggatggagagagaggattcaaaggtgaacctgga
tatccaggcccaccaggagcggtgattggctcacagacaggaactcagcccggccctaaa
ggcgattctgggtaccccggaactcctggatccaaaggagagagagggccacaaggttta
acaggccctccaggagcaccaggaattccagctattggtggtggtggtcagcctggacaa
ccaggcttcccaggagagagaggtcagaagggtgaagctggcgttccaggggtatctctg
cctggtcccccaggacgtcaaggggctcctggtcctcagggttcaccaggtctccctgga
ccgccaggcttttccacagcaggacaaaactgcatccctggagaacccgggcgtcccggt
gtgcagggagagagaggttaccctggagagacaggccagaaaggtgaaaagggagacact
tgtgtgaactgctatggtgaaaccagtgcccttccaggtccccagggacctccaggacca
cctggattcccaggaaatcctggcccccagggtgtcaaaggagacagaggatttccagga
atacctggtggtgttggaccttctggtgctcctggtccacaaggttctccaggatacccc
ggagagaagggagacccaggtgatgccatctcagtgagtggcgtacggggagagaagggc
gacaccggcttccctggaccacctggtctgcccggcctggatggtcgacccggtcgtgac
ggactgcctggaagtcctggacccaaaggagctcctggctctttgcaagtgaaaggagaa
cgagggctccccggtgatccaggttccccaggtattccgggagacaggggtccaccagga
ccacctggctttggacctcaggggccctcaggagagaagggtatccagggtgtatcagga
agaccaggaggtcctggagcacccggtgctaaaggtgaaccaggcctgtcagtcgctgag
aaaggcttaccaggacccagaggacaggatggagaaccaggactgcccggctcaccaggt
aacccaggtcagcctggacagcctggattccccggtttaccaggagccaagggtgatcct
ggactccctggcatcggactcccaggacccccaggtgctaaaggattcccaggtatcccc
ggacagccaggatctcctggaggaccaggcagaccaggagttgatggacttcccggccag
cctggaatacctggatccaagggcgagcctggctttggtcttcctggccctccaggttta
ccaggagtacctggatctaaaggattccccggaccaaagggagattctggtttccctggc
agccctggttcacctggacgatctggatttgacggcgctccaggagctaaaggcgatccg
ggcatacctggtacacctggagctcgtggaccacctggacccaccaccattggctcagtg
ggacaacctggcccacctggtcctcctggcccaatgggaccaccaggcgagaaaggattc
cctggatcaaatggcgcaaagggagaccctggtcctccaggtctagacatcccaggtctg
cctggcgaccgaggaactcctggtttcccaggttccccaggaccacccggaaccccagga
cctcccggaggaccaggacgtgatggcctgcctggactgccaggtaccaaaggtgacatg
ggtcccatgggacctccaggaccctctggaggaccaggaggcccaggagggcctggtgct
cctggctttaaaggtgaacctggattccctggcagagacggcacacctggcggtcccggt
ggtaaaggagagagaggcgacccaggtgttatgggacccccgggagctaccgtgacatca
gcagtcacaaagggagacaaaggagatcctggactaccaggttcaccaggttttccaggt
cagaaaggcatctctggtctctctggtgatcctggactgccgggatcagatggacgccct
ggactccccggaccaccaggtcctaagggagatgctggaatcccaggaggcccaggcagt
cctggaggtccaggacctaaaggcgctatgggagaaatgggaataccaggaccagcaggg
cagaagggtctaacaggtcagccaggaaggtctggaaccccaggacagccaggaggacct
ggtttccctggagccaaaggtgaaccaggctctgccggcgttggaccacctggacctgct
ggactcaagggtgaacctggccagccagggttcccgggagctccaggactgaaaggaact
ccaggatcacctggtctcccaggtttaccaggagggccaggtgccaaaggtgaccctggt
ctgccaggattccaaggtcctcctggtgtctctggccctaagggtctcgatggtgggcct
ggtgccccaggtctcagtggagctcccggcagaccaggagagcctggccgaccaggagga
ccagggttgccaggagagaagggtcaggccggtcgggacgggatcccaggaccagctgga
gtgaaaggagatcctggtcttcctggttatggtggtcctggtccatctggtcttccaggg
ttgccaggtgcgaagggagacccaggtcctccaggaggacctggcacacctggtttcccc
ggcactaaaggagaggctggtttccctggttctcctggttctagtggcaaccccggccca
cctgggcccccaggacttgctctacagggccccaaaggacttcaaggacctcctggacca
cctggaagagcaggtccctcaggtcctccaggtccacctggcccggagggtgtccgtggg
ccagcaggaagtggtggtgtgaagggagagaagggtattcctggtgctcctggccagcca
ggcttcgccggatcaaagggagatcctggtactcctggattcccaggttcacccggtctt
cctggtgctactggtgtgaagggagatatcggtctgcctggtgttcctggcttccctgga
ccaaagggagacccaggaagtcctggtggtgccggtcttcgtggtgatcctggagaagtt
ggacccacaggacctcctggtgaccctggtgtacctccagcacccattgtggtgaaggga
gagcgaggaccacctggtcctcaaggccagcctggtagtcgaggacttcctggttctcaa
ggacgtgatggacttccaggtcagcctggtgaccctggagatcctggtttggagggtcct
cctggcttcagcggtccacctggcaggaagggagacagtggaccggccggtcaacctggt
cagcaaggctaccctggtccccctggttcagatggtccacaaggttctcctggtctacca
ggatcagtgtctgcggctcatggcttcctcatcacccgccacagccagggtcaggatgtt
cctttctgtcctgagggaactaaccccatctatgacggttactccttgctctatgtgcag
ggtaacgagagggcacacggacaggatcttggctctgccggcagctgtctgcgcaggttc
agcaccatgcccttcatgttctgcaacatcaacaatgtctgcaatttcgcctcccgcaat
gactactcctactggctgtccacgcctgagcccatgcccatgtccatggcccccatcacc
ggagagagcatcaagcctttcatcagcaggtgttcagtatgtgaagctccagccatggtg
attgcagtccacagtcagacaatccagattccagattgccctgacaaatggtcctctctg
tggattggatattccttcatgatgcacactagcgcaggagcagagggctccggtcaggcc
ttggcctcacccggctcctgcctggaggagttccgcagcgctcccttcatagagtgccac
ggcagagggacatgcaactactacggcaactcctacagcttctggctggcaactgtagaa
ccctcagagatgttcaggaagccccagtcggagacttttaaagcgggtaacctacggacg
cgcgtcagccgctgcgtggtctgcatgaagagtacgtaa
DBGET
integrated database retrieval system
