Acanthopagrus latus (yellowfin seabream): 119026633
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Entry
119026633 CDS
T08233
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119026633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alat03041
]
119026633
03009 Ribosome biogenesis [BR:
alat03009
]
119026633
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119026633
Spliceosome [BR:
alat03041
]
Complex A
U1 snRNP components
U1 related factors
119026633
Complex B
119026633
Ribosome biogenesis [BR:
alat03009
]
Eukaryotic type
Pre-60S particles
Helicases
119026633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
119026633
NCBI-ProteinID:
XP_036966958
EnsemblRapid:
ENSALTG00010025562
LinkDB
All DBs
Position
1:19242765..19250376
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AA seq
635 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGNRGGPPPGKFGNPGERLRKKHWNLDELPKFQK
NFYQEHPDATRRPLQEVEQYRRSKEVTVKGRDCPKPIAKFHEAAFPSYVMDVISKQNWTE
PTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YVQINIGALQLSANHNILQIVDVCSDMEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASRGLDVEDVKFVINY
DYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAE
DRGGRGRGGRGGYKDDRRDRYSGGGRSNFGGSSYRDRDSDRGFGNGPKSAFGGNKAQNGG
SYGGNSGNSSGSYGNNNYSNSNGQGNFGSPANQVGAFGNQSFQGPPQFGAMQRAAQNGMN
HPPFPFNSQPPPPQAQQPPPPPPMVPYPMPPPFPQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttcagacagagaccgtggcagagacagagggtatggtgggggacctcct
cgttttggtggtggtggaggaggcaataggggtggaccccctccgggaaagtttggcaac
cctggtgaaagacttcgaaagaagcactggaacctggacgagcttccaaagtttcaaaag
aacttctaccaggaacatccagatgccacacgcagaccacttcaagaggttgaacagtac
cgaagaagcaaagaagttacagtcaaaggacgggattgccctaaaccaattgcaaaattt
catgaagctgcattcccaagctacgtaatggatgttattagcaaacagaactggactgaa
ccaactcccattcagtctcaggggtggccagttgccctgagtggcaaagatatggtcggc
atcgctcaaactgggtctgggaaaacccttgcataccttctgcctgcaattgtgcacatt
caacatcagccattcctggagcacggagatggacctatttgcttggtgctggcaccaacc
cgagagctagctcagcaggtacaacaagttgctgctgaatacggcagggcctcacgtctg
aagagcacctgcatctatggtggtgcgcccaaaggaccccaaatcagggacctagagaga
ggtgttgagatttgcattgctaccccagggcgcctcattgacttcctggagtgtggcaag
actaatttgcgccgttgcacctatctggtgctggatgaagctgaccgcatgctggacatg
ggatttgaacctcagatccgcaagatagtggaacaaattcggccagaccgtcagaccctg
atgtggagtgctacctggcccaaggaggttcgccagctggctgaggacttcctgaaggac
tatgtccagatcaacattggtgcactgcagctcagtgccaatcacaacatcctacagata
gttgatgtttgcagtgacatggagaaggaggacaaattgatccgtttgctggaggagata
atgagcgaaaaggagaacaagaccattatttttgtggaaaccaaaaggcgttgtgatgag
ctcaccagaaggatgagaagagatgggtggccagcaatgggaattcatggagacaagagc
caacaggagagggactgggtccttaatgagttcagatatggcaaagctccaatccttatc
gctacagatgtggcctcccgcggcttagatgtggaggatgtgaaatttgtcatcaattat
gactaccctaactcctccgaggattatatccaccgcattggacgcacagcccgaagtcaa
aaaacgggcacagcctacaccttctttacccccaacaacatgaaacaagccagcgatctg
atctctgtgctccgcgaggccaaccaggccattaaccccaagctgatccagatggcagag
gacagaggaggtcgcggaagggggggaagaggtggctacaaggatgaccgtcgggatagg
tattctgggggtgggaggagcaactttggcggtagtagctacagggacagggacagtgat
agagggtttggcaacgggccaaagagtgcctttggtggcaataaggcccaaaatggtggc
agctatgggggtaacagtggtaactctagtggtagctatggcaacaacaattacagcaac
agcaacggacagggtaatttcggttcaccagcaaaccaggtgggtgcctttggtaaccaa
agcttccagggccccccgcagtttggggccatgcagcgtgccgctcagaatggcatgaac
cacccgccattccctttcaactcccagccaccaccaccacaggcccaacagccaccgccc
ccaccaccaatggtgccctacccaatgccaccacccttcccacagtaa
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