Acanthopagrus latus (yellowfin seabream): 119027332
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Entry
119027332 CDS
T08233
Name
(RefSeq) synaptopodin-2 isoform X1
KO
K24066
synaptopodin-2
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119027332
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
alat04990
]
119027332
Domain-containing proteins not elsewhere classified [BR:
alat04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
119027332
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
119027332
NCBI-ProteinID:
XP_036968336
LinkDB
All DBs
Position
10:complement(20122632..20142938)
Genome browser
AA seq
1611 aa
AA seq
DB search
MGTGDYICVTLRGGAPWGFTLREGEGDTYRPFLVSQVEEGGRAFLAGVQEGDEVVSLNGE
PCADLTLLRAFALIDTSIDCLQLLLKRYCSIAPEDYEPEETYCGQRESSAVALESTTLHI
FSPKHRSQSPRELYISESQDEAYYGESDSDIAFPRGPQLLSTELHVPSSGDRRGRKPGFK
DNDDEVQRCFSPGDMVELQVSLSEQTLDDVGGCTSLGSAIGIQGEVSNREAVETIHTTTT
SHYVPSAVREPLGQRGVVLSSPSMLGQVEVILQQSEASGAGRGILSVGGSRVSGSVGSQS
EGEEGGGHSEGVPGSFTVTFGIPSDEVTPAEEQDSDSEGDQDKPSKHRARHARLRRSESL
SEKQVKEAKSKCKRIALLLTAAPPNPNNKGVLMFKKHRQRAKKYTLVSYGTGEDEPEYSD
EEDEEENHTVEFTLVAPNDSEVDKNFVTNAHSSKGVLTINFDKGLLEIERNLNNQAEMEC
LPETKGKGAQMFAQRRLRMDEISAEHEELRRQGIPVEGIQEIEKKAVEHSYMQSTTEGHA
YMDVNIHQQSQQQHQYQQQTQQQQQYQQYQEQQYYEQQQNYQQQLQQQQQQQYQQQYQQQ
QYEQQHYQQQQMYQQQQDYHQQQQQLQHYTTNVNGTVQHQACEMQSSFSNRSAKPFSVEN
MTTTPYSPAMSGTNQDSVGQGEQIASRDERISTPAIKTGVLSEARKRNTGKPMFTFKEAP
KVSPNPVLLNLLNRSDKKGFESGPEEDYLSLGAEACNFLQSSVKHKTPPPVAPKPVINPS
TFPWCPQIEVTNQDMPQQAENSVSTPAVAPTTETTSAPELEPAPAPAPEPSPPPAPQEVP
ASSATEEQPTWTLPEPKSQQLPAQEEHGQMNSTMQPEHAPATSWPAAQTQAQQQPSNNSW
HPAQAQPQEPPQSPQQPPWVTRQPTQTQAQPQTNTWTPPNQPSWSKPQEQIQAPTNAQPT
WAQPQEQALSQPQVQPPWAQPQEQTLSQPQVQPPWTRSNEQPNQQQMQPTWGQPKDQPMQ
QQPQAPWAQPSQTETQPLPPWMQQPQQKSQAQPPWVQQGQPESQQQPPWVQQPQHQAPQQ
AWPQAQAPGQPQPTWVSAQPQQQQQPSMNTWPPSQTQAQVQPPWIQAGQAQPPAQPQANL
NPWAPVPAQAQSQPSWGQHPAEHGQNPMSSWAQDQNQTQQQPPWAQPIPPQPTPQPNWQQ
STSNSSPQPPMSTWPSAQPQPQTPVSAWAPQTQQTPVNVSASMVNTHPSPKPWLPPQNAP
QNQTPPPPPQRIHSFAFGQRASSPINPMATVLNPSSQGSSFEMPAVRGKGADMFAKRQSR
MEKFVVDSETVQANKESRSTSPVASLPTEWKYTPNVRAPPPLAYNPIQSPLYPPAATKQP
PPSSPSTKKKQKEKQKPAPKPLSVVEVMKHQPYQLNSSLFTFGPAAEANKPPTPKPDSLP
PNPPVENQPIRYEQMAPIQPAGPFNAPYPQQPYGMPMQPMIHDGHYQQNPVYPPSNPYPQ
PPGGPYQQAYNQQYQQPAPPAYHIQGPQSPNLTYQQAPQAPYPPTNSPPYLATPSVPYQP
PPPSSYTVPSFPVAARPESAAGGNNMAAPKPKFTAKKSSAQVWKPTAVDKE
NT seq
4836 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccggggattacatctgcgtgacgctgcgtggtggtgcgccctggggattcacc
ctgcgagagggagagggggacacctatagacctttcttagtctcccaggtagaggaaggt
ggtcgtgccttcctggctggagtgcaggaaggtgatgaggtggtgtcactcaatggagag
ccgtgtgctgatcttaccctcctacgagcctttgcactcatcgacacgtccatcgactgt
ctgcagctccttcttaaaagatactgctccatcgccccagaagactatgaaccagaagag
acatactgtggtcagagggagtcgtctgctgtggctttagaaagcaccacactccacatc
ttctccccaaagcacaggtcccaaagcccaagggaactctacatatctgagtcccaggat
gaggcctactatggggagtcggacagcgacatagcatttcccagggggccccagctgctt
tccaccgagctacatgttccctcatctggagatcgaagaggcagaaaacctggttttaag
gacaatgatgacgaagtgcagcggtgtttctccccaggggacatggttgagctgcaggtg
tcgctgtctgagcaaaccttagatgatgttgggggctgcacctctcttgggagtgccatt
gggatccagggagaagtctcaaacagagaggccgttgagacgatccacaccaccaccaca
tcacactatgtgccgagtgctgtcagagagccactcgggcagcgtggggtggtgctcagc
tccccctcgatgctggggcaggtggaggtcattttgcagcagtcagaagcatcaggagca
gggaggggcatcctgagtgtgggtggctccagggtcagtggaagtgttggatcccagagt
gaaggagaagaaggaggagggcactctgagggagttcccgggtcttttaccgtcacattt
ggaattccctcagatgaggtgacaccggctgaagagcaggactctgattctgagggggat
caagacaaacccagcaagcatcgggcaagacacgccaggctcaggcgcagcgagagtctg
tctgagaagcaggtgaaagaggccaagtccaaatgtaaacgtattgctctccttcttacg
gctgctccgcccaaccccaacaacaagggggtgttgatgttcaagaaacatcggcaaagg
gccaagaaatacacacttgtcagctacggcacaggagaagacgagccagagtacagcgac
gaagaggacgaggaagaaaaccatactgttgaatttacccttgtggctcctaacgattct
gaagtagacaagaattttgtcactaatgcccatagcagcaaaggtgtgctgactatcaac
tttgataagggtctccttgaaattgaaaggaacctgaacaaccaagcagagatggagtgt
ttgcccgaaaccaaaggcaagggtgcccaaatgtttgcccagcggcgtctaagaatggat
gagatttctgctgaacatgaggagctcaggcgccaaggtatcccagtggaaggaatacag
gagattgaaaagaaggcagtggagcactcctacatgcagtccacaacagagggccatgct
tacatggatgtaaatatacatcaacaaagccaacagcaacatcagtaccaacaacaaacc
caacagcaacaacaataccagcaatatcaagagcagcagtactatgagcaacaacagaat
taccaacaacaactacagcaacaacaacaacaacaataccaacagcagtatcagcagcag
cagtatgaacaacagcattatcaacaacagcaaatgtatcagcagcagcaagactatcat
caacagcaacaacaactgcaacactatactacaaatgtcaacggcacagtccaacatcaa
gcctgtgaaatgcagagttctttcagcaatcgttctgcaaagcctttctcagtagagaac
atgacaactaccccttattctcccgcaatgagtgggaccaatcaagattccgtaggccaa
ggagagcagatagcttcccgggatgagcgcatttctacccctgcaattaaaactggtgtt
ttgtcagaagcaaggaagagaaacactggcaagcccatgttcacatttaaggaagcacca
aaagtatcccctaacccagtattgctaaacctcctcaacaggagtgacaagaagggtttt
gagtcaggacctgaagaagactaccttagccttggggctgaggcatgtaatttcctccag
tcctcagttaaacacaagactcctccaccagtggctccgaaacctgtgatcaaccccagc
acttttccttggtgcccacagattgaagtgaccaaccaggacatgcctcagcaagctgaa
aatagtgtgtccacacctgctgtagcccccaccacagagactacttctgctccagaacta
gagccagcccctgcacctgcccctgagccctctcccccccctgccccccaggaagttcct
gctagctctgccacagaggaacagcccacatggactcttccggagcctaaatctcaacaa
ctgccagcacaggaagaacatggtcagatgaattctaccatgcagcctgagcatgctcct
gcaactagttggcctgcagcacaaacacaagcacaacagcagccatctaacaattcttgg
catccagctcaagcgcagccacaggaaccgcctcagtcaccacaacagcctccttgggtg
acacgtcaacctacccagacccaagcacagcctcaaacaaatacttggacccctccaaac
cagccatcctggagtaagcctcaagagcaaatacaagctccaacaaatgctcagccaacc
tgggcccagcctcaagagcaagcactgtctcagccacaggttcagccaccctgggcacag
ccccaagagcaaacactgtctcagccacaggttcagccaccctggacacgctctaatgag
cagccaaatcagcagcaaatgcaaccaacttggggtcagcctaaagaccagccaatgcag
cagcagccccaggcaccatgggcacagccatcacaaacagaaactcagcctctaccacca
tggatgcaacaaccccagcaaaagtcccaagcacaaccaccatgggttcagcagggtcaa
ccagaatcccagcaacaaccaccatgggttcagcaaccacagcatcaggctccacaacaa
gcatggccacaggcccaagcaccaggtcagcctcaaccaacttgggtttcagctcagcct
caacagcaacagcaaccttcaatgaatacatggcctccatcacaaactcaagcacaagtt
cagccaccctggatccaagcaggccaagctcaacctccagcacagccccaagccaatttg
aatccatgggcgccagtacctgcccaggctcagtctcaaccatcatggggccagcaccct
gcagaacatggtcagaatccaatgagttcttgggcccaagaccaaaatcagacccaacaa
caacccccttgggctcagcccattccaccccagcccacaccacagccaaactggcaacag
tccacttcaaattcttcaccacagccaccaatgagcacatggccttcagctcagccacag
cctcagacacctgttagtgcctgggctccacagacacagcaaacacctgtgaatgtttct
gcatcaatggtgaacacgcacccctctccaaagccttggcttccaccacaaaatgcccca
caaaaccagaccccaccacccccaccacagcggatacactcgtttgcctttggtcagagg
gcttcatcacccatcaacccaatggccactgtcttaaacccatcatcgcaaggttcatct
tttgagatgccagccgtcagaggaaaaggagctgatatgtttgccaagaggcagtctcgt
atggagaagtttgttgtggactctgagactgtgcaagcaaacaaggaaagccggtcaaca
tcgccagttgcttctttgccaactgagtggaaatatacacctaatgtacgtgctccacct
ccactggcatataatcctattcagtcccctctttaccccccagcagcgacaaagcagccc
cctccaagtagcccttcaaccaagaaaaaacagaaagagaagcaaaagcctgcccctaaa
cccctcagtgttgtagaggttatgaagcatcaaccctatcaacttaattcctcactcttt
acttttggcccagcagcagaggctaacaagccccctacacctaagccagactctttacct
cctaaccctcctgtcgaaaaccaaccaattagatatgagcaaatggcccctatacagcca
gctggaccatttaatgccccatacccccagcaaccttacgggatgcccatgcagcctatg
atacatgatggccactaccagcagaacccagtttatcctccctctaacccttatccacag
cctcctggaggtccataccagcaagcatataaccaacaatatcagcaacctgccccaccc
gcttatcatatccaaggtcctcagtccccgaaccttacctaccaacaggcaccgcaggcc
ccttacccacccaccaatagccctccctatctggcaactccctcagtgccttaccagcca
ccgcctcccagtagctacactgttcctagttttcctgtagctgcaagacctgaatcagca
gcaggtggcaataatatggctgctccaaaacctaaatttacagcaaaaaagagctcagct
caggtgtggaagccaacagcagttgataaagagtga
DBGET
integrated database retrieval system
