Acanthopagrus latus (yellowfin seabream): 119027552
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Entry
119027552 CDS
T08233
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119027552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alat03041
]
119027552
03009 Ribosome biogenesis [BR:
alat03009
]
119027552
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119027552
Spliceosome [BR:
alat03041
]
Complex A
U2 snRNP components
U2 related factors
119027552
Complex B
119027552
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
119027552
Ribosome biogenesis [BR:
alat03009
]
Eukaryotic type
90S particles
Helicases
119027552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
nSTAND3
AAA_29
AAA_25
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
119027552
NCBI-ProteinID:
XP_036968767
EnsemblRapid:
ENSALTG00010000670
LinkDB
All DBs
Position
10:complement(20695883..20721321)
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AA seq
761 aa
AA seq
DB search
MFKRHRLDLGEDVSSSRKRSSDGRDRDRDRDERPRDRDRDRDRDRDRDRDRDRDVKLSGV
PTFPAAGSGSFLKQTPIQQQINPFTNLPHTPRYYEILKKRLQLPVWEYRESFTDILMRNQ
SFVLVGETGSGKTTQIPQWCVDMVRSTPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLG
QEVGYSIRFEDCSSAKTVLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMG
VLKEVVRQRPDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEA
AIRTVIQIHMCEVDEGDVLLFLTGQEEIDEACKRIKREVEDLGPEVGDIKIIPLYSTLPP
QQQQRIFEPPPPNKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE
SLLVTAISKASAQQRAGRAGRTCPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQL
KKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKM
VIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKVADESKMRFAHIDGDHMTLLNVYHAF
KQNHESTQWCYDNFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFNSRDYYTNIRRALV
TGFFMQVAHLERTGHYLTAKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIK
PEWLVKIAPQYYEMSNFPQCEAKRQLERIIAKLSSKEYTQF
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtttaagcgacatcgtttagatttgggtgaagatgtttcttcgagcaggaagagatcc
tctgacgggcgtgaccgggacagagaccgtgatgagcggccgagggacagggaccgtgac
cgtgaccgcgatcgagaccgtgaccgtgacagggacagggatgtgaagttgtccggggtg
cccactttcccagctgcaggcagtggcagcttccttaagcaaacccctattcagcagcag
atcaaccccttcaccaacctgccccacacgccacgctattacgagatcctgaagaagcgg
ctgcagctgcctgtctgggagtacagagagagcttcactgacatcctgatgcgtaaccag
tcgtttgtactggtgggagagactggctctgggaagaccacacagatccctcagtggtgc
gtggacatggtgaggtcaacgccggggccgaagagagcggtggcctgcacccagcccagg
agggtagcagccatgagtgtcgcccagagggttgctgatgagatggatgtcatgctgggc
caagaggtgggctactccatcaggtttgaggactgcagctctgccaagacagtactcaag
tacatgacagatggaatgttgctgcgggaggccatgaatgatcctctgctcgagcgctat
ggtgtcatcatcctggacgaggcacacgaacgcacattagctacggatattctcatgggg
gtcctgaaggaggtggtccgccagagacctgacctgaaggtgattgtcatgagcgccacg
ctcgatgccgggaagttccaggtgtactttgacagctgcccactgctcaccatccctgga
cgcacgcatcccgtggagattttctacacgccagaaccagagcgggactacctggaggcg
gccatccgcactgtgatccagatccacatgtgtgaggtggatgaaggggacgttttgctc
tttctcactggacaagaggaaattgacgaagcctgcaagcggatcaagagggaggtcgaa
gacttggggcctgaagtcggtgacatcaaaatcatcccactgtactccacgttgcctcca
cagcagcagcagaggatctttgagccacccccacccaataaaccaaatggtgccatcgga
aggaaggttgtcgtgtcgacaaacattgccgagacgtccctgaccatcgacggcgtggtg
tttgtaattgatcccggatttgccaagcaaaaggtgtataacccccgtatcagagtggaa
tcccttttggttacagccatcagcaaggcctcagcccagcagcgggcaggtcgtgccggc
cggacgtgcccaggaaagtgtttccgcctttacactgagaaggcttacaagacagaaatg
caggacaacacatatccagagattctgaggtctaatctgggctctgtggtgctgcagctg
aagaaactgggtatcgatgacttggtgcacttcgacttcatggacccaccagccccagag
accctgatgcgagccctggagttgctgaactacctggcggcgctcaatgacgacggtgac
ctgacggagctgggctccatgatggcagagttccccctggacccccaactggccaagatg
gtcatcgccagctgtgaattcaactgttcaaacgagatcctctccatcactgccatgttg
tcagtcccacagtgcttcgtccgacccacggaggctaagaaggtggctgacgagtccaag
atgcgctttgcccacatcgacggggaccacatgacactgctcaacgtctaccacgccttt
aaacaaaaccatgagtccactcagtggtgctatgataatttcgtcaactaccgctcactg
atgtcggcagacaacgtccgccagcagctgtccaggatcatggaccgcttcagcctgccg
cggcggagcactgagttcaacagccgagattactacaccaacatccgccgagcgctggtc
actggcttcttcatgcaggtcgctcacctggagcgcacgggccattacctgactgcgaag
gacaaccaggtcgtacagctgcacccctccactgtgctggaccacaagccagagtgggtg
ctttacaacgagtttgtgctcaccaccaagaattacatccgaacgtgcaccgacatcaag
ccagagtggctggtgaaaattgccccgcagtactacgagatgagtaacttcccccagtgt
gaagcaaagagacagctggagcgtatcattgcaaaactctcatccaaggaatacactcag
ttctaa
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integrated database retrieval system
