Acanthopagrus latus (yellowfin seabream): 119027994
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Entry
119027994 CDS
T08233
Symbol
vcam1b
Name
(RefSeq) vascular cell adhesion protein 1b
KO
K06527
vascular cell adhesion molecule 1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
119027994 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
alat04515
]
119027994 (vcam1b)
04090 CD molecules [BR:
alat04090
]
119027994 (vcam1b)
04091 Lectins [BR:
alat04091
]
119027994 (vcam1b)
Cell adhesion molecules [BR:
alat04515
]
Immunoglobulin superfamily
VCAM
119027994 (vcam1b)
CD molecules [BR:
alat04090
]
Proteins
119027994 (vcam1b)
Lectins [BR:
alat04091
]
I-type lectins (Siglecs)
119027994 (vcam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
C2-set_2
C1-set
Ig_C17orf99
ICAM1_3_5_D2
Ig_5
ICAM_N
C2-set
Izumo-Ig
V-set_CD47
PKD
BiPBP_C
Motif
Other DBs
NCBI-GeneID:
119027994
NCBI-ProteinID:
XP_036969344
LinkDB
All DBs
Position
11:337119..345779
Genome browser
AA seq
809 aa
AA seq
DB search
MSLLSAVLLMSSWCVQGLHVDVFPGRPLLKLGERHQLVCRVQDCPTVPSMSWSTLDDRPL
TASISTNQSQSVVTFDPVSMEHEGALLCRVSCGGERKQVKSTVHVYSFPSGPVITGEDHL
RLGVESMLTCQVSDLYPTEHLSLTWLRGDEVLQSSAGDPGSSSVRSEYRFTPVAQDSGGT
IVCQATLDLQDLQSINLTKQTNVSLNLLYAPVVTVTPDSVLVMAGSPITLTCSVEGNPKP
TVTWSFRKAEGVVEGRGQDHQLVFSSVSQSEAGRYDCEAQNSEGNQSATVQVTVHAPPTN
TSLSVSPGVEVLEGQQVTLTCLSDGTPTPKIVLRREGVELQTTDHASPTLSFSLPSARLE
DSAHYRCEASNQYGAQLVSSSVSVTAHPLQVEVSPLVSAAERGSALVLTCRASGCLHPPS
ITWTRTGQDGSVLQRTQQQDGLFPLHLQDLDLQDQGGYSCEAECDSISRTGTSRVQVFSF
PSDPVLEDPGPVLLGQEMALHCHVNNVYSANQMRILWLSGNKMLMSESFRFSGSLQNVSS
VLHPRVEEDQQVLSCSAELLTEDGDVWRSRSTSIPLQIQYPPRRTSLSVSPGEEVLEGQQ
VTITCRSDGTPPTTLVLRRDGVELQRTDSAPSALFFILSSAQLEDSAHYQCEASNQHGAQ
LISSSLTVRAPPRNTTVLILPSAVVQEGQNVTVCCQTISFPPSAVVLKKLTNGTERYSAN
GTFLLVNVTARDSGLYQVNVTNNLGYQVKVFSISVRERSSSLPPRLSIVIIPVACAAAGL
AATALLLDYLRRSRKKGFYQLPQSAPPSA
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgctgtcagctgtgctgctgatgtcatcatggtgcgttcagggtctgcatgtt
gacgtgtttcctggacggcctctgttgaagctgggcgaacgtcaccagctggtgtgtcgg
gttcaggactgtcccacagtgccgagcatgtcctggtctacgctggacgaccgccccctg
accgcctccatcagcaccaatcagagccagtcggtggtgacctttgaccccgtcagtatg
gagcacgagggagcactgctgtgtcgagtcagctgtgggggggagaggaagcaggtcaag
agcaccgtgcacgtctactccttcccatcaggtccagtgatcacaggggaggaccatctg
aggctaggggtggagtctatgctcacctgtcaggtgtctgacctgtaccccacagagcat
ctgagcctcacctggctcagaggtgacgaggtcctgcagagctccgcgggtgatcctgga
tcgagctcggtccgttctgagtacaggttcactcctgtggcccaggactcaggagggacc
atcgtctgccaggccacgctggacctgcaggacctgcagtctataaacttgaccaaacag
accaacgtctccctgaatctgctctacgctcctgtcgtcacagtgacaccagactcggtg
ctggtgatggcgggctctccgatcactctcacctgctctgtggagggaaatcccaagccg
acagtgacctggagcttcaggaaggcagagggcgtggttgaggggcgtggccaagaccat
cagctggtgttcagctcagtgagtcagtctgaggccggacgctacgactgtgaggcccaa
aacagcgaggggaaccagagcgccactgtccaggtcacggtccacgctccacccaccaac
acctccctctcagtgagtccaggtgtagaggtgctggagggtcagcaggtgactctcacc
tgcctctcagatggaactccaacccccaaaatagtgctaaggagggagggggtggagctt
cagacgactgaccacgcctcccccacactctcgtttagcctcccctcagcccggttggaa
gactccgcccactaccggtgtgaagcctccaaccagtacggagcccagctggtcagcagc
tccgtcagcgtcacagcccaccctctgcaggtggaggtgagtcctctggtctcggcagca
gagcggggttcagctctggttctgacctgcagagcctccggatgcctccaccctccctcc
atcacctggacgaggacagggcaggacgggagcgtcctccagaggacgcagcagcaggat
ggactttttccgctccacctgcaggacctggacctccaggatcagggaggctacagctgt
gaggctgagtgtgactccatcagcaggacaggaaccagccgggtccaggtcttttcattt
ccatctgatccagttctggaggatcctggacctgtcctgctgggtcaggagatggcactt
cactgccatgtcaacaacgtctactcagccaatcagatgaggatcttgtggctgtcaggc
aataagatgctgatgtcagagtcgttcaggttctccggttccttacagaacgtctcgtct
gttcttcatccccgggtggaagaggatcagcaggttctgagctgcagcgctgagcttctg
acggaggacggagacgtgtggaggtcgaggagcaccagcatcccccttcagatccaatat
cctccgaggagaacctccctgtcagtgagtccaggcgaggaggtgctggagggtcagcag
gtgacgattacctgccgctcagacggaactccacccaccacattggtgctgaggagggat
ggggtagagttacagaggacagactccgccccctccgcactcttcttcatactctcctcc
gcccagctggaagactccgcccactaccagtgtgaagcctccaaccagcacggagcccag
ctgatcagcagctccctgaccgtcagagctccccccagaaacaccacagtcctcatcctg
ccatctgcagtggtccaggagggacaaaatgtcaccgtgtgctgccaaacgattagcttc
ccgccatcagcagtggtcctgaagaagctgaccaatgggacggagagatattccgccaac
ggaacctttctattggtcaacgtcacggccagagactctgggctttaccaggtcaacgtg
accaacaacctgggatatcaggtcaaagtgttcagcatcagcgtcagagagaggagcagc
agccttcctcccaggctcagcatcgtcatcattcccgttgcctgcgctgccgcagggctc
gctgccactgctctgctcctcgactacctgagaagatccaggaagaaaggcttctatcag
ctgccccagtctgctccgccctcagcctga
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