Acanthopagrus latus (yellowfin seabream): 119028404
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Entry
119028404 CDS
T08233
Symbol
crocc2
Name
(RefSeq) rootletin isoform X1
KO
K16469
rootletin
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
alat03037
]
119028404 (crocc2)
Cilium and associated proteins [BR:
alat03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
119028404 (crocc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rootletin
PUMA_CC
ATG16
Motif
Other DBs
NCBI-GeneID:
119028404
NCBI-ProteinID:
XP_036970221
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All DBs
Position
11:5049822..5086193
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AA seq
1952 aa
AA seq
DB search
MTSQREQGDHSPRLEAVIQKLEESMLHSDGSSGERSLTLRGDGQESTPVSTHIRQIITRN
LMEQPAGESSQVSKLEESRAPREQLSPGQMDRDQPPVKHASLTDRLDQMLMLPSSADSDQ
DSVSPGFLQLPNKERAYRQKLQVYQEAQQRQAQLVQKLQTKVLQYKKRCGELEEQVLEKT
SDSEKMRLLLQAHLDSAQRQQRTEQDLNMDLQNKSAQLEEEQKRCASLSQVNCMLRKQLE
KTATVNHGLTESLRKAREDAELCDSRLRREQETCASHLSREQARVRALWRQAASLRSTFT
QLRTFTDRALSDMRGECVTASRQLHVACMNLEAKVTQDSTSSCVEMSALERQLKDKLKEA
MQLQGRWDAEKIELNYRILELTDMVKHLRSQNSEKDASLNTMQISLDRMETRRTEDKAGM
EILHTEIEALQRILSNIQQLVGGESDSSGSESVSPSSHHGRSPLRNTTLMAVQSALSKHQ
KQAQDLRGRLDAALEQVDTLRDHLQERDTERRELEQKIQEVRRESQEAKKDLEESLRDSN
RYRCSLELMSSEKARLEKLLSGLQQEVDSQCAELEALRGSSLELQRQRDLLRQQREDLEM
QLARQRTEAQRGERSLEELEGKHSDLRRELVTVKEALNQITLQREVLEDDKSSLAMALSK
MESQSAGHELALTKLQNQEAALKDSLAKMAALCEGLAKDKVELSRILLQTEGEKAELVER
RREAEVERAAAREETARVQQELMDLLADKQALESSHSHLQDLCQKLEAELSLLQKENSQA
LEQHSQVNRQMQAVSEELCACRKELETQTTALKRATHDREELAKDKAALDVKLNTADRNA
CGLTQELVALRAEKESLETSLFESQELASSLEAERTRMEGERCSLLLANEALTRDGAQMR
VDAEHQFAQAAQERSKLEERMAQVERNALLALNNKEQSHREQLEAERRQKEQQCAELTVQ
RELAEEQLRRQYEELRVHSQKELQQVQEELDRLQQDFNQSLLQAESEKQQALSQKEVEKA
ALMEKVATLQQDLAAEGMKLECMQREAMSKQEQDKHAMAVLQTELQDLRNQFEESLNFHE
NVKKSLTEQVRECNQQRDHTQQELEGLRRQLQEAEDELVKVRKELTETHRELQDCAQDRD
KQRKEALDLRRLLGDETREKEAIQASNQELRAFIKRAEGDNSSLRRTVEEREQKVAVLEE
CKSSMQQEAMSLRSSMRELEKSRLQARRELQELRRQVKVLEGENGQQKQELRELQARVCQ
EEQREEEARREAFTLKQRVLECEAGREAALNEVVGLQRHVVELETAKHQNQELLQEREAY
QQQFDQQNRVTTAQLEEALEDARIQVKELSVQAGFAESKVQGLEEQLGLVDAKRRDLELK
LAGLCSALRHTVGTGHKRLSGTPGSCKHSPSPWRNRLQIKGGDTVKDGSVFSLSHGEDEM
DVELQTALQEFQQELRRTQRDRDEATAQIVSLNQQLTELQSSQDRSATQLQQLQKSLKQS
EQEKRAMGERLHEAHMSLSLQEEVAHRAEREKRSLEEEIAQLRTCLQTAEAECRALQDKL
ELLQGSESRANVEQRKLKESLEAAENRVSRLELSQRTLEGELQRAQLRAAELDAEAGALQ
ERLTEQRRKLCESEDRCAALSISEEKLATSLARAEQHESQLRDQIHKLSNTLSDNRSSSG
ALQEQITQLQRALTASEQDRRLLQERLDKTRDALSESKRLYHKLTEQNQNLQRAQEDLEL
KDSELEKHNRTLKESLKQQQEAELQIHESSKQLQREKAELQDRVTNLQSSLQKLQSERAE
MERVLTRLAKDKSALRRTLEKVEMERLRREEDAASAAREKEQLGQIVRGLEQELAEKQDE
CQAVQAQISQLEHAHTQRLLEVTARHHQEVTLETDRLRDSQLQAEEALETREKAHRQRVK
GLEEQLLTLKEQLDQETRRRQAYFNQMLQPGV
NT seq
5859 nt
NT seq
+upstream
nt +downstream
nt
atgacttctcaacgggagcagggtgaccactcacccagactggaggctgtgattcagaaa
ttggaggagtctatgctccactctgatggcagctcaggagagaggtctctgacacttaga
ggtgatggacaggagtctacgcctgtctccacccacatccgccagatcatcacacgcaac
ctgatggaacagccagctggtgagagctctcaggtcagcaagctggaggagagcagggcc
ccaagggagcagctgtctcccggtcagatggaccgtgaccagccgccagtcaagcacgcc
agtcttacagacaggctcgatcagatgctaatgctaccttcatcagctgactcagaccag
gacagtgtgtcaccaggattcctgcaactgccaaacaaggagagagcttacaggcaaaaa
ttgcaggtgtaccaggaggcccagcagagacaagcccaacttgttcagaagcttcagacc
aaggtccttcagtacaaaaagagatgtggggaactagaggagcaggtgctggagaaaacc
tcagattctgagaagatgagattgttgctgcaggcccatctggactcagcccagcgtcag
cagcggacagaacaggatctcaacatggatctccagaataagtctgctcagctggaagag
gagcagaagaggtgtgccagcctcagccaagttaactgtatgctgcggaaacaactggag
aagacagccactgtcaaccatgggctgaccgagagcctaaggaaggctcgtgaagatgct
gaattgtgtgatagccgtttgcgtagagaacaagagacgtgcgcctcccatctcagtcgt
gaacaggctcgtgtcagagcgctgtggcgccaggccgcttccctgcggagcactttcacc
cagctaaggacgttcactgacagggctctgtctgatatgcggggggaatgtgtcactgcc
agtcgacagctgcatgttgcctgcatgaacttggaggccaaagtaacacaggacagcacc
tctagttgcgtggagatgtcagcgttggagaggcagctgaaagacaagctaaaagaggcc
atgcagcttcagggtcgctgggatgcagagaaaattgaactcaactacagaatcctggag
ctgactgatatggtgaaacacctccgcagccaaaacagtgagaaggatgccagcctcaac
accatgcagatcagtctggacaggatggagaccaggagaacagaggacaaagcagggatg
gagatcctccacacagagatcgaagccctccaaaggattttatccaatatccaacagttg
gttggcggtgagagtgatagcagtggctctgaaagtgtgtccccctcatctcatcatggc
cggtctcctctgaggaacaccacactgatggctgtgcagagtgcactctccaagcaccag
aaacaagcacaggacctgcgtgggcgcctggatgctgctctggagcaagtggacacactg
cgcgatcacctgcaggagagggacactgagaggagagagctggagcagaagatccaggaa
gtaaggagggaaagtcaggaggctaaaaaagatctggaagaaagcctgagagacagtaac
agataccgctgctctctggagctcatgtccagtgagaaggcccgcctggagaagctgctg
tcagggttacagcaggaggtggactcccagtgtgccgagctggaggcactgcggggctca
tcactagagctccagagacagcgggacctcctgaggcagcagagggaggatctggagatg
cagctggcacgccagcgcacagaggcccagagaggcgagaggagcctggaggaacttgaa
gggaagcactcagatcttcgtagggagcttgtgacagtgaaggaggccctgaatcaaatc
accctgcagagggaggtgttggaggatgataagtccagtcttgctatggctcttagcaag
atggagtcccagagtgctggacatgagttagccctcaccaaactgcaaaatcaggaagct
gcccttaaagattccctggccaaaatggcagccctatgcgaaggccttgccaaagacaag
gtcgagctcagtcgtatcctgctgcagacagaaggtgagaaggcagagcttgtagagcga
agacgggaagctgaagtggagcgggcagcagccagggaagagacagcacgggtgcaacag
gagctgatggatctgcttgctgacaaacaagccctggagagctctcacagccacttgcag
gatctttgccagaagctcgaagcagagctgagcctgctgcagaaggagaactctcaggcc
ctggagcagcactcccaggtcaacaggcagatgcaggctgtgtcagaggagctgtgtgcg
tgcaggaaggagcttgagacacagaccacagccctaaagagagctacccatgacagggag
gagctggccaaggacaaggctgctctggatgtcaagctaaacaccgctgaccgaaacgcc
tgcggtctcacgcaggagctggttgcacttagagcagagaaggagtccctggagacgagt
ctgtttgagagccaggagcttgcctcgtctctggaggccgagcgcaccaggatggagggg
gagaggtgcagcttgctcctggctaacgaggccttgacgcgtgatggtgctcagatgcgt
gtggatgctgaacaccagtttgcacaagccgcacaagaacggagtaagttagaggagagg
atggcccaggtggagagaaatgccctgctagcactgaacaacaaagagcaaagtcacaga
gagcagctcgaagctgaacgcagacaaaaggagcagcagtgtgcagagctgacagttcag
cgggagctggctgaggagcagctgcgtagacagtatgaggagctgcgtgtgcacagccag
aaggagctgcagcaggtgcaagaggagctggacaggctgcagcaggacttcaaccaaagc
ctcctgcaggctgagagtgagaagcagcaggctttgtcccagaaagaggtggagaaggct
gccctcatggagaaggtggcaaccctgcagcaggacctggcggcagaaggcatgaagctt
gagtgcatgcagagggaggcaatgagcaaacaggagcaggataagcatgcgatggccgtc
ttacagactgagctacaagacttgcggaatcaatttgaggaatctttgaacttccatgag
aatgtcaagaagagtctaacagagcaggtcagagagtgtaaccaacagagagatcacaca
caacaggagttagagggcctccgtcggcagctgcaggaggcagaggatgaacttgttaaa
gtgcggaaggagctgactgagactcacagagagctccaggattgtgcccaggatcgggac
aaacaacgaaaagaagccctggacctgagaaggctcttgggtgatgagaccagagagaaa
gaagccattcaagcctccaaccaggagctgagagctttcatcaagagagcagagggtgac
aacagcagcttgagaagaactgtggaggagagggagcagaaagttgctgtcttggaggaa
tgtaagagctcgatgcaacaggaggcaatgagtctacgaagcagtatgagagagcttgag
aagtctcgcctgcaggcacgcagagagctgcaggagctgcgcagacaggtaaaggtcctc
gaaggcgagaatggccagcagaaacaggagctgcgagagctacaggcccgggtatgtcag
gaggagcagagggaggaggaggcgcgtcgcgaggctttcactctcaagcagagagtgttg
gagtgcgaggctggcagagaagcagcgctgaatgaggttgtcggtctgcagcgccatgta
gtggaactggagacagcaaagcatcaaaaccaagagctgcttcaggaaagagaggcttat
cagcagcagtttgaccaacagaacagagtgaccactgcccagctggaagaggcactagaa
gacgccaggatccaggtgaaagagctctcagtgcaggctggcttcgctgaaagcaaagtc
cagggcctggaagagcagctgggcctagtcgatgccaaacgcagggacctggagctcaag
ttagccggattgtgttcagctctgcgccacactgttggcactggccataagaggctttca
ggcacaccagggtcctgtaagcactctccctctccctggagaaaccgcctgcaaataaaa
ggaggagacactgtgaaagatggatctgtgttctccttgtctcatggtgaagatgaaatg
gatgtggagttgcaaacagctcttcaggagttccagcaggaactcaggcgcacacaaaga
gaccgggatgaagccacggctcaaatagttagtttaaatcagcagttgacagagcttcag
agcagccaggataggtcggccacccagctgcaacaactgcagaagtccttgaagcagtca
gagcaggaaaaaagagcgatgggagagcgattgcatgaagcacatatgtccctttccctg
caagaagaagtagcacatcgcgcagagagggagaagagaagccttgaggaggagatagcc
caattgaggacttgtctgcaaactgctgaggctgagtgcagagcactgcaagacaagctt
gagcttttgcagggctcagaatcccgtgcaaatgtagaacaacgcaagttgaaggagtct
ctggaagcagcagagaacagggtgagccgtctggagctctcccagcgcacccttgagggt
gaactgcagagagcccagctcagggcagcagagctggatgcagaggcaggggcactgcag
gaaaggcttacagagcagcggaggaagctgtgtgagagtgaagaccgctgtgcagcactg
agcatcagcgaggagaagttggccacttcactggctcgagctgagcagcatgagagccag
ctgagagatcagatccacaaactgtcaaacaccctcagtgacaacaggagcagcagtgga
gcgctgcaggagcagatcacacagctgcagagggctctgactgccagtgagcaggaccga
aggctgctgcaggagcgtctggataaaacaagagatgccctctcagagagtaagaggctg
taccacaagctgacagagcagaaccagaaccttcaaagagcccaagaggacttagagctc
aaagattctgagctggagaaacataacaggacgctgaaggagagcctgaagcagcagcag
gaagctgaactgcagatccatgagagctccaagcagctgcaacgagagaaggcagaactc
caggacagggtcaccaaccttcagagctctttgcaaaagctacagagtgagagagccgag
atggagagagtgctgacacgcctcgctaaagacaagtcagcacttaggaggacactggag
aaggtggagatggagaggctgaggagggaggaggacgcagcgtcggcagccagagagaag
gagcagctggggcagatagtccgtggcctggagcaggagctggctgaaaagcaggacgag
tgtcaggctgtgcaggcccaaatctcccagctggagcatgctcatacacagcgcctcctg
gaggtgacagcccgccatcaccaggaggtgactctagagacagatcgtctgagagacagt
cagctccaagcagaggaggccttggagaccagggagaaggcccatcgccagagggtgaaa
ggcctggaagaacagttgctgactctgaaagagcagctcgatcaggagacaaggagacga
caggcctatttcaatcagatgctacaacctggcgtgtag
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integrated database retrieval system
