Acanthopagrus latus (yellowfin seabream): 119029468
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Entry
119029468 CDS
T08233
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alat03041
]
119029468
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119029468
Spliceosome [BR:
alat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119029468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
OB_NTP_bind
HA2_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank
Ank_5
ATPase
Ank_4
nSTAND3
AAA_22
AAA_7
PhoH
Ank_3
SRP54
AAA_30
T2SSE
AAA_16
Radial_spoke_3
AAA_29
Motif
Other DBs
NCBI-GeneID:
119029468
NCBI-ProteinID:
XP_036972180
LinkDB
All DBs
Position
12:complement(650073..707458)
Genome browser
AA seq
1398 aa
AA seq
DB search
MSNHGTASQKQTKSQNTPRRCSSSTSLDEEVKIAVNLSLERFRYSDQKEMEFPSSLSSTE
RAFIHRMAQSLGYISKSKGKGPTRFLTLRKKDGSEKPRPAMPLTLFHNSLYFIRSLLQRF
PVSNRERIDLQPNNKSGKSMAPEPDNSCDRNRTSGRLNNGIPMVPRRRNPSELDSFRRSL
PVHERQGEIVQLIRENRVVLVVGETGSGKTTQIPQFLLDECSRNDEPCRIFCTQPRRLAA
IAVAERVATERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVFLRTLMAGDASLTTVTHV
IVDEVHERDGLTDFLLTKMQDVLQKIPTLKLILSSAALDVDLFLKYFGSCPVINLKGRQF
EVTEFFLEDILKLTGFNHKDMRKYKEETHRKEKKQKRLTEWCKAVEKSCFVEEQMTALSA
TGFHQESNSLEREDGTFNKTNENGTEQLEQWLMKEMDSCISNVFLNEDQDAFTQLFNLIL
YERVNVDYRHSETGSTPLMVAAGRGFLTQMEQLLNMGANINMKASNGWTALDFAKHFQQT
EAVDLLKSSIPLGEVSSLDESTLLQCGSAELSTEDQELLKLYHHGFDDELVDLDLIMALL
HNICSTSSDGAVLIFLPGYDEIVTLRDRILYDDKRFSTQSERYRVFTLHSDMQTRDQKKA
MDTSPPRVRKIILSTNIAETSITINDVVFVIDSGKVKEKSFDTLSHVSMLKTVWISKASA
LQRKGRAGRCRPGICFHLFSRLRHSNMLEFQVPQLLRMPLQELCLQTKLLAPSSCPVAEF
LSKAPQPPSAHAIKNAVQMLKTIDAMDQYEDLTDLGYHLADLPVEPHLGKMVMCAVVLKC
LDPILTIACTLAYRDPFILPAQGSQKKAALDCRKSFTSSSLSDHMALLRAFQAWQKARSE
GWERAFCEKNFLSQATMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSENWAVVKA
ALVAGMYPNLVNVNQETSLLSSNREKKVHFHPTSVLSQSKFMENRKAKLAHAYPTDWLIY
DEMSRGHRIASVRCCSMVTPITVAIFGGCAKIPSSALQEPALQKVTDSPLDDISDSETED
LAGLKIDDWLIFQMERETAGLVFELRQKWQSLFIKRIRCPSKPWSQQEEAVIRTLVSVLT
AEEQAAGLQQPTGIGQRPRPMSSEEGPHDSVKNSKNSPQLPTNTMNDKACRTPAASGRLQ
MKAHNKDEASLPINQLSDEPHFYSNFSCSVTADSPSESPGPSSSGKISKPVSHFGSSSVQ
YFIMKSSNIRNIEISQQKGIWSTTPSNEAKLTKALLENNLIILIFSVQGSGHFQGYARMT
SVITQESCQDWDFMGLGGVFSVKWIHKESLPFHCTQHILNPWNDNKKVQISRDGQELEPQ
AGNQLLMLWEGNSESQVQ
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcatggcacagcttcacaaaaacaaaccaaaagccagaacacaccacggcgt
tgttccagctccaccagcctcgatgaagaagtcaagatagcagtgaacctctctctggag
aggttccgatacagtgaccaaaaagaaatggaatttccctcctccttgtccagtactgag
agggctttcattcatcgtatggcccaatcccttggttacatttcgaagagcaaagggaaa
ggaccaactcgcttcctcaccctcaggaagaaggatggatcagaaaaacctcggcctgca
atgcccctcactctcttccacaattcattatatttcatccgcagtctgcttcagaggttt
cccgtcagcaatagggaacgcatagacctacagccgaacaataagagtggcaagtctatg
gctccagagcctgacaacagttgtgataggaataggacaagtgggcgcttaaacaacggc
atacccatggtacctcggaggaggaatccatcagaactggacagctttcgacgctccctg
cctgtgcatgaacgccagggggaaattgtccagctcatcagagaaaacagggtggtgctg
gtggtgggagagactggctctggaaaaactacacagatcccacagttcctgttggatgaa
tgcagtaggaatgatgagccttgcagaattttctgcactcagcccagacgtctggctgcc
attgctgtggctgagagagtggcaactgagagaggagagagtgtgggccagactgtcggc
tatcacatcagactagagagcagggtctcccccaagacactgctaaccttttgcaccagt
ggagtgttcctcagaacattgatggctggagatgccagcctgacaactgtcacacatgtc
attgtggacgaggtgcatgagcgtgatggtctgactgatttcctgctcactaaaatgcag
gatgttcttcagaagatcccaacattaaaacttattctctccagtgctgctctggatgta
gatctgttcctgaagtattttggctcctgccctgtgatcaatctcaaaggaagacagttt
gaagtgacggaattctttctggaggatattctgaagctgacgggcttcaaccataaggac
atgaggaaatacaaggaggagacacacagaaaggaaaagaagcagaaacgtttgacggag
tggtgtaaggctgtggagaagagttgttttgttgaggaacagatgaccgcattgtctgcc
acaggcttccaccaggaaagtaactccctggaaagagaagacggcaccttcaacaaaacc
aatgagaatggcacagaacaattggagcagtggctgatgaaagaaatggactcctgcatt
tctaacgttttcctcaatgaagaccaggatgctttcactcagctcttcaacctcatcctt
tatgaaagggttaacgtggactacaggcacagtgagactgggtccacacctctgatggtg
gcagcaggacgggggttcctcacacagatggagcaactgctcaacatgggggccaacatc
aacatgaaggcatccaatggatggacagctttagactttgccaaacactttcagcaaaca
gaggctgtggatctactcaaatcctccattcctttgggggaggtgagcagcctggatgag
tccactctgctgcagtgtggcagtgcagagctaagcactgaagaccaggagctactcaaa
ctctaccaccacggctttgatgatgagttggtggacctggacctcatcatggcgctgctg
cataatatctgctccaccagtagtgatggggctgtcctgatttttcttcctggatatgat
gagatagtgacactcagggaccgcatcctgtatgacgataaaagattttccacccagtct
gagaggtaccgggtgttcactctacattcagatatgcagacacgggatcagaagaaagcc
atggacacctctccacctcgtgtcaggaagataattctttctactaacatcgcagagaca
agcatcactatcaacgatgttgtcttcgtcattgattcaggaaaggtcaaggagaaatcc
tttgatactctcagtcatgtatccatgttgaagacagtttggatttccaaagccagcgct
ctacaaaggaagggaagagcgggacgatgcagaccagggatttgtttccaccttttcagt
cgactcaggcacagtaacatgctggaattccaggttccacagctgctgcgcatgccactg
caggagctgtgtctacagaccaaactactggctccttcctcctgtccagtagcagagttc
ttgtccaaggctccacaacctccttcagcacatgctatcaagaatgctgtgcagatgcta
aagacaatagatgctatggaccagtacgaagacctgactgatctgggctaccacctggct
gatctgcctgtggaaccccacctaggcaagatggtgatgtgtgctgtggtactcaagtgt
ctggaccccattctaaccattgcctgtacattggcctatcgtgaccccttcatccttccc
gcccagggctctcaaaaaaaagctgctcttgactgccgcaaaagtttcacttccagctcc
ctcagtgaccacatggccttgctgagagccttccaggcatggcagaaagcccgtagtgag
ggctgggagagagccttctgtgagaaaaacttcctgtcccaggccaccatggacatgata
cttggcatgaggacgcagctgctgggacaactccgcgctattggtttcgtccgtgcccgt
gggggcagtgatatccgcgatgtcaatctgaactctgagaattgggccgtggtaaaggca
gccctagtggcaggcatgtatccaaacctggtcaatgtcaatcaggagacctccctgctt
tccagtaacagggagaagaaagtccactttcaccccacatcggtcctgagccagtccaag
tttatggagaaccgcaaagccaaattggcccacgcctatcccacagactggttgatctat
gatgagatgagccgaggccacaggatagccagtgtccgctgttgctccatggtgacaccc
atcactgtagccatatttggaggttgtgccaaaattcccagctcagccctacaggaacct
gctctacagaaagttacagatagtccactagatgacatcagtgacagtgagacagaggac
cttgctgggttgaagatagatgactggctcattttccaaatggaaagagaaactgcaggg
ctggtgtttgaactcaggcagaagtggcaaagtttgttcatcaagaggatccgctgccct
tccaagccatggtctcagcaagaagaggctgtcattcgcactctggtttctgtgctcaca
gcagaggagcaagcggcaggcctgcagcagcccacagggattggccagcggccccggccc
atgtcatcagaggagggacctcatgattctgtgaagaactccaagaacagtcctcaacta
cccacaaacacaatgaatgacaaagcctgtagaacaccagcagcctcaggtcggcttcag
atgaaagcccataacaaagatgaggcctcactgcccataaatcagctctctgatgagcct
cacttctacagtaatttttcctgctctgtgactgcggacagcccctctgaaagccctggt
ccctcctcctctggaaagatctcaaagccagtgtctcattttggctcttcatcagtgcag
tatttcatcatgaagagcagcaacatcaggaacattgaaatttctcagcagaaaggtatc
tggtccactacaccaagcaatgaggcaaaactcaccaaagccctactggagaataacctc
atcatcctcatcttttctgttcagggctctggacacttccagggctatgctcgaatgaca
tcagtcatcacgcaggagagctgccaggactgggactttatgggactaggaggggttttc
agtgtgaagtggatccacaaggagagtcttccttttcactgtacccaacacatcctcaac
ccatggaatgacaacaagaaggtccaaatcagcagggatggacaggagttagagccccaa
gcaggcaaccagctactgatgctttgggagggaaactctgagagtcaagttcaataa
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integrated database retrieval system
