Acanthopagrus latus (yellowfin seabream): 119029616
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Entry
119029616 CDS
T08233
Symbol
si:ch211-196i2.1
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119029616 (si:ch211-196i2.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119029616 (si:ch211-196i2.1)
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119029616 (si:ch211-196i2.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
119029616
NCBI-ProteinID:
XP_036972453
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All DBs
Position
12:5861313..5965824
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AA seq
1846 aa
AA seq
DB search
MFRRLLKWTLCLLGLITTSSTSPDDATADFGGESGSGMLYPGRKRAPADQLMKSVSYTNS
DEVNILEEISFQLSNNSNASMTMDDSRCPVLQVGQYSTLALPLQQLLTDGFADEFSLLVQ
LRSPQRDERSVFTMLSPNSHVMLQLRISANAVIFIGTQQRHYEFPVSSLSDGRWHHVAVS
VSSKRLALYVDCSLLESVDWVYHGIGIRTDGLLMVGGIIEGFETPFEGHLRQLTFLMGDP
DAAQQHCSHHPPHCGDAAPKPPRSPRVSNALENVLLSSNDLEDLLGNPKDKSFLSFGRNN
MFLRQGSSRGDGTLPSGSSRSKGSVGRGDVFVVDEDTDLLDPIFQNGRQVNPQWKPSRNG
FKGNQKGKPELSSKLLEENITTDKKTDSGGRTSSLLPRKPSDDILDLDIESATKKPIMVF
PVVPKIPTDPRVDIDSNKLWEETDEWSRSVSPTPLVIISGPSAKGKLDTTGHRAKHNGKL
PEKERPGVVTIVSRDRDLVLGSDGKTYRLQRGPPGRMGPPGQEGCPGEPGLTGFKGDKGT
TGPEGRPGKKGERGPPGPAGLPTFYLWKNTAEEWAAFQQTNFYQLLLAGWPSKEGSAGPP
GEMGRTGMQGPPGEPGERGRPGMPGEMGERGHRGPPGREGPPGRDGENGDDGQPGSPGAP
GSQGLWGYRGQRGSKGEKGDEGLIGLNGPRGEIGESGEKGSTGVPGPPGPVGPPGPQGIR
GGPGPEGPCGADGDSGLDGPSGLSGPMGPPGFTGQVGAQGANGSRGDMGPAGSVGPIGPQ
GPPGLDGQMGPPGLRGPQGHPGLMGVPGPKGDPGPVGPMGARGDPGFEGPMGEPGERGPM
GFPGGTGNRGPYGDKGDPGPKGDRGIEGAAGIRGPQGERGPIGFPGFPGTKGQPGPTGPE
GTNGETGPQGKKGGRGLKGNRGPDGRNGKPGPRGNKGRTGERGHTGQPGPLGLLGPPGPE
GAEGKPGTQGPSGAAGCAGNKGLTGFQGITGDRGADGPPGSPAPPGKPGPPGIPGPLGDR
GFMGKQGMEGPQGPVGMYGMQGSVGMRGLPGFTGQRGEPGLRGLPGPVGKPGPAGLPGPS
GEKGPQGPKGRPGDDGPKGILGPPGPPGVQGVDGTIGKPGPRGSPGPPGSQGPHGPTGIP
GTQGADGLLGTAGEKGHKGLPGLPGDTGSTGQSGQQGPPGQTGTEGQTGRKGDQGDIGSC
GKNGHSGPPGERGLEGPKGSQGPPGPAGEEGDVGHPGETGDPGPKGEKGVVGPLGLSGRE
GPWGDLGENGARGPKGDKGHIGLMGEPGLMGEVGPAGLPGLQGSAGPRGPLGLDGPQGQK
GESGPEGITGPPGSVGPQGITGARGVRGDTGSLGPPGPVGQVGPQGDEGPKGEPGPQGLK
GEPGTPGPQGEQGEDGLQGIRGPPALPGLEGPPGEMGPQGSPGLTGAPGVQGRPGPEGKP
GTKEEKGENGKNGSPGKTGHVGRRGKRGKAGVRGTRGHRGPKGEKGDTGQVGLPGWPGLI
GIPGLRGEPGDEGEKGKEGVKGDMGLAGPPGADGMKGIRGPVGLPGPLGLKGEQGNIGPP
GPRGTPGMPGLPGLFGLKGLKGYQGLPGLPGRRGLPGPPGAPGPPGKSLNMTLTQLKDLM
YVSDKPNYHLMQTLIDSLQQDLQLLVDPPDGSKEHPATTCLELWLCHPEYSSGMYYIDPN
QGSPGDALLAYCSFSSTSKQTCLHPQDSQLATKAWMDEFSEEQSFHWLSRLEQGFQFYYP
GANVVQMRFLRLHSSTAIQKMTYSCHPGHVLGQTDRDVKFLTDSRKQSYLGALKDCVPGE
ETIPGPRESVFEFEDLQLLPLRDIAVMGGENFTHQFGFSVGPVCFS
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atgttccgccggttgttaaaatggacgctttgcctcctcgggctcataacgacgagctcc
acctcacctgacgatgctacagcggactttggaggcgagtccggctctgggatgctgtac
ccaggaaggaaacgggccccagctgatcagctcatgaaatcagtgtcatacacaaattct
gatgaggtgaacattctagaggagatctcatttcagctgtcgaacaacagtaacgcctct
atgactatggatgacagcaggtgtccggtcctacaggtgggacagtattccaccttggct
ctccctcttcaacagctcctcactgatgggtttgcagatgagttcagtttgctggtacag
ctgcggagtccacagagagatgaacgcagtgtcttcaccatgctcagccctaacagccat
gttatgctgcagctgcggatcagtgctaatgctgtcatcttcataggaacacagcaacgc
cactacgagttcccagtcagcagcttgtctgatggaaggtggcaccatgtggctgtcagt
gtctcctccaagcggctggcactgtatgttgactgctctttgctggagagcgtggactgg
gtgtaccacggcattgggatcagaactgatggactgctcatggtcggaggaatcattgag
ggttttgagactccatttgaaggtcatcttcgacagctaaccttcctgatgggtgaccca
gatgccgcccagcagcattgcagccatcaccctccccactgtggcgatgccgcccctaag
cctccccgctccccacgcgtcagcaatgccttggagaatgtacttctgtcctcaaatgac
ctggaggacctgctggggaatcccaaggacaagtcatttttgagctttggcagaaataat
atgtttctgcgacaagggagttctcggggtgacgggacactgccttcaggatccagtcgg
tccaaaggttcggtaggtcgtggggatgtctttgtagtggacgaggacactgacttgttg
gatccaatcttccaaaatggcagacaagtcaaccctcagtggaagccttccagaaatgga
tttaagggaaaccagaaggggaagcctgaactgtcttctaaactattggaggagaacatc
accacagacaaaaagactgactctggtgggaggacttcatcgctgttgcccagaaaacca
tctgatgacatccttgacctggacatcgaaagcgccaccaagaagccaataatggtattt
cctgtagttccgaaaatccctacagatcccagagtagacatagactccaacaaattatgg
gaggaaactgatgaatggtcaaggtctgtctcacccacacctcttgtaatcatctctggt
ccatctgcaaagggaaagcttgacaccactggtcatagagccaagcacaatggtaaacta
ccagagaaggagcgccctggcgttgtgaccatcgtgtccagagacagagacctggtcctg
ggctcagatggcaaaacataccggctccagagaggaccacctggccgaatgggtccccca
gggcaggaaggatgtcctggtgagcctgggctgactggatttaaaggtgataagggtacg
acgggccctgaagggcgtccaggaaaaaagggggagcgaggacctcctgggccggcaggt
ttacctaccttctacctgtggaagaatacagcagaggaatgggctgcctttcagcaaacc
aatttctaccagttacttcttgctggttggcctagtaaagaaggctctgcaggaccacct
ggagagatgggcaggaccggcatgcagggacctcctggtgaacctggggaacggggacga
ccaggcatgccaggagagatgggtgagcggggtcacaggggccctccaggacgagaaggg
cccccagggagagatggggaaaatggagacgatggtcagcctggatcacctggtgcccct
ggatcacagggcctttggggatacaggggacaacgagggtctaaaggggaaaaaggtgat
gagggtctcattggcctcaacggtccaagaggggaaattggtgaatctggtgaaaagggt
tcaactggtgtaccaggaccacctggacctgtgggaccaccagggcctcagggtatccga
ggtggccctgggccagaggggccctgtggggctgatggggacagtggactggatggccct
tcaggtctatcagggccgatgggtcctccaggttttactggacaagttggtgctcaggga
gccaatggctcaaggggagacatgggacctgctggcagtgtcggccccataggcccacag
gggcctccaggtttagatggacagatgggacctccaggactcagaggacctcaaggacat
ccaggactgatgggtgttcctggacctaaaggggatcctgggcctgtggggccaatgggt
gcccggggggatcccggctttgaggggcccatgggtgaaccaggggaacgagggcccatg
ggttttcccgggggaacgggtaacaggggaccatatggggacaaaggagatccaggacct
aaaggcgacagaggtattgaaggggcagcaggtattaggggtcctcagggagaaagaggc
cctatcggcttcccaggtttcccaggcaccaagggccagccgggccccacaggcccagag
ggcacaaatggagaaacaggccctcagggaaaaaagggtggccgtgggttgaaggggaac
aggggaccagatggacgaaatggcaaaccaggacccagagggaacaagggtcggactgga
gagaggggacacactggccagccgggcccattgggtttgctggggcctcctggaccagag
ggagcagaaggaaagcctggtacacagggtccctcaggtgcagctggctgtgctggcaat
aaaggactgacgggttttcaaggaattactggagacagaggagcagatggccctccaggt
tctccggcgccaccggggaaacctggacctccaggaataccaggacccctaggagacagg
ggattcatggggaagcaaggcatggagggaccccagggcccagtaggcatgtatggtatg
caggggagtgtgggcatgcgcgggcttccagggttcacaggacaaaggggtgagccaggt
ttacgaggtttacccgggcctgttgggaagccaggacctgcaggtttgccgggcccctcg
ggagagaagggaccccagggacctaagggtcggcctggagatgatggacccaaagggatt
ctgggcccaccaggccctccaggtgtccaaggtgttgatgggacaattggaaaacctgga
cctaggggaagtccagggcccccaggatctcagggtccacatggcccaacaggaatccca
ggaacacagggtgctgatggattattaggaacagcaggagaaaaaggacacaagggttta
cctggattgcctggtgatactggctcgacaggacaaagtggacaacagggcccccctgga
caaacaggaactgaaggccaaactggacgcaaaggagaccagggggatatagggtcttgt
gggaaaaatggtcattcagggcctccaggagagagaggacttgagggcccaaaaggctca
cagggaccacctggaccagcgggagaagagggtgatgttgggcatcctggtgaaactgga
gatcctggacccaaaggggagaagggggtggtgggacctttgggtttgtctggtcgtgaa
ggtccgtggggagatctcggggaaaatggtgcgaggggtccaaagggggataagggccac
attggactgatgggtgaaccggggttaatgggcgaggtgggacctgcaggtctcccgggg
ttacagggatccgcaggccctcggggccctctgggactagatggaccgcagggacagaag
ggggaatctgggcctgaaggtattactggacctccggggtcagtaggccctcagggaata
actggtgcacgtggtgtcagaggagacacagggagcctgggaccacctggtccagtagga
caagttggacctcagggagatgaggggcctaaaggggaaccagggccacagggactgaag
ggagagccaggaacaccaggtccacaaggggaacagggtgaggatggtctgcaaggaatc
cgaggtcctccagctctgccagggttagaggggcctcctggagaaatgggaccccagggt
tctcctggactcacaggggctcctggagtacaaggaagaccaggacctgaggggaaacca
ggcacaaaagaggagaagggagaaaatggcaagaatggatcaccaggcaagacgggtcat
gttggaaggagggggaaacgggggaaggccggagtcagaggcaccagagggcacagagga
ccaaagggcgaaaagggagacacaggacaagttggcctccccgggtggccagggctcatt
ggaatcccaggcttacgtggagagccaggggatgaaggtgaaaaggggaaagagggtgtg
aaaggggacatgggactggctggaccacctggagctgatggcatgaagggtatccgtggt
cctgttgggttgccaggtccacttggcctaaaaggagagcaggggaatattggtccacca
ggtccgaggggtacaccgggaatgccaggattgcctggtttgtttggattaaagggtttg
aaaggctaccaaggtttgcctggtctgcctggaagaagagggctcccaggtccacctggg
gctcctggacccccaggaaagtcactgaacatgacgttgactcaacttaaggacctgatg
tatgtgtccgacaagcccaactatcatctgatgcagactctgatagattctctgcagcag
gaccttcagctgctggtggatcctccagacggcagcaaggagcatcctgccaccacctgt
ctggagctttggctctgtcaccctgaatacagcagtggaatgtattacattgaccccaac
cagggcagcccaggtgatgctctgctggcctactgcagcttctcttccacatcaaaacag
acctgccttcatcctcaagactctcagttggccacaaaagcctggatggatgaattttct
gaagaacaatcttttcactggctcagcaggctggagcaggggtttcagttttactatcca
ggtgctaatgtggtgcaaatgcgttttctgaggttgcacagtagcaccgccatccagaag
atgacttactcctgccatccaggacacgtactgggccagacagacagagatgtcaaattc
ctcactgactcaaggaagcaaagttacctcggagcacttaaagattgtgtgcctggagag
gagaccattcctggacctcgggagtctgtgtttgagtttgaggacctccagctgcttcct
ctgagagacatcgcagtgatgggaggtgaaaacttcacacaccagtttggcttcagtgtt
ggacctgtgtgtttcagttag
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