Acanthopagrus latus (yellowfin seabream): 119029921
Help
Entry
119029921 CDS
T08233
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119029921 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119029921 (mtrex)
03041 Spliceosome [BR:
alat03041
]
119029921 (mtrex)
03009 Ribosome biogenesis [BR:
alat03009
]
119029921 (mtrex)
03016 Transfer RNA biogenesis [BR:
alat03016
]
119029921 (mtrex)
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119029921 (mtrex)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119029921 (mtrex)
Spliceosome [BR:
alat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119029921 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
119029921 (mtrex)
Ribosome biogenesis [BR:
alat03009
]
Eukaryotic type
Pre-60S particles
Helicases
119029921 (mtrex)
Transfer RNA biogenesis [BR:
alat03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119029921 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
119029921
NCBI-ProteinID:
XP_036973050
LinkDB
All DBs
Position
12:19291562..19311662
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDSLFSVFDDEQQTATTKKIPASLTPDIGKPPSKNGTDKDGGPSPRAKREADSDG
GEEVVFGKRPRHEAVSANDLNLAEFMPQVKVEQVETVEGCSHEVALPASDEYKPLKPRVG
KAAKEYPFVLDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGSGGGKWDPRGRK
GGTRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKHLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
AIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KKYEEQYHTIEIPNEEAVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNE
DADFGWGVVVNFCKKSNVKTSTESEPLYVVEVLVHCSKDSVKDAATEAAKPAAPGETGEM
QVVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVL
QMDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSGDELLLTEMIFNGLFNDLTVEQAT
ALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLGQFKPHL
MDVVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcatttggagatagtttgttcagcgtgtttgacgatgaacaacaaactgcg
acaaccaaaaagatacccgcgtctttgacaccagatattgggaaacctccaagtaaaaat
gggactgacaaggatggtggtccgtctccccgggccaagagggaggcggacagtgacggt
ggagaggaggtggtgtttgggaagagaccgcgacatgaggcggtgtctgctaatgaccta
aatcttgcagaatttatgccccaggtgaaggtggagcaagtcgagactgtggaaggatgc
tcacatgaggttgctctgcctgccagtgatgaatataaaccactgaaaccacgtgtgggg
aaagcagcaaaggagtacccttttgttcttgacccgttccagcgtgaggccatcttatgt
attgacaacaatgagtctgtgcttgtgtctgcacacacctctgctggcaagactgtctgt
gctgaatatgccattgcactggccctcagagagaaacagagagtgatcttcaccagcccc
atcaaggccctctccaaccagaagtacagagagatgtacgaggagttccaggatgtggga
ctgatgactggtgatgtcaccatcaaccccacagcctcctgccttgtcatgacaacagag
atcttgaggagcatgctgtaccgaggctctgagatcatgagggaggtggcgtgggtcgtc
tttgatgagatccattacatgagagatgcagagcgtggtgttgtgtgggaggaaaccatc
attcttcttcccgacaatgtgcattacgtcttcctgtcagccaccatccccaatgccagg
cagtttgctgagtggatttgtcatctacacaagcagccatgccatgtggtctacacagac
taccgtcccactccactgcaacactacatcttcccagcagggggcgatggactccacctt
gttgttgatgagaacggagacttcagagaggacaacttcaacacagccatgcaggtgctg
agagacgcaggggattctgggggaagcggaggaggcaaatgggacccgagaggacggaaa
ggaggcaccagaggtccttccagtgtgttcaagatagtgaagatgatcatggagaggaac
ttccagcctgtcatcatcttcagtttcagtaagaaggagtgtgaagcctatgctctgcag
gtggccaaactggattttaaccgagatgatgagaaacatctggtggaggaagtgttcaac
aacgctgtggactgtctctcggacgaagacaagaaactccctcaggtggagcatgtgctg
ccactgttgaagagggggataggaatccatcatggaggccttctacccatcctgaaagag
accatagagatccttttctctgaaggcctgctcaaggcgctgtttgctacagagacgttt
gccatgggcataaacatgcctgctcgtacagtgcttttcaccagcgcccgcaagtttgat
ggcaagaatcaccgctttatcacctcaggtgagtacatccagatgtcggggcgagctggg
aggagaggaatggatgacaggggcatcgttattttcatggtggatgagaagatgagtcca
gcgatcggcaaacagctactcaagggctctgcagatcctttaaacagtgccttccacctg
acctacaacatggtgctcaacctgctgcgagtggaggagatcaacccggagtacatgctg
gaaaaatctttctaccagttccaacactacagagctttgcctggagttgtggaaaaaata
aagaagtatgaggagcagtaccacactattgagattcccaacgaagaggccgtggtcact
tactttaaaatccgacagcagctggccaaacttgggaaagagatacaagaattcatccac
aaacccaagtactgcttgcccttcttgcagcctgggcgacttgtcaaggtgaaaaacgaa
gacgctgactttggctggggtgttgttgtaaacttttgcaagaagtctaatgtgaagact
agtacagagtcggagccgctgtatgtggtggaggttttggtccactgtagtaaggacagc
gttaaggatgctgcgactgaagccgctaagcctgctgcaccgggggagacaggagagatg
caggtggtcccagtgatgctccatctcctgacctccatcagctcagttcgcctttacatc
cccaaagacctgaggccctttgacaacagacagctcatgctcaaatcaatacaggaggta
cagaaacgtttcccagatggcgttcctctgctcgaccccatcgacgacatgggcatcaaa
gaccctgccctgaagaaagttattcagaaagtggaggcctttgagcaccgcatgtactcc
caccccctgcacagcgaccccaacttggaatctgtttattctctctgtgagaagaaagct
ctgatcgcagcagacgttcgaacagccaagcgagagctgaagaaagctcggactgtcctg
cagatggacaagctgaagtgcaggaagagagtcctgcggcgactcggattcgccagtccc
tccgatgtcatcgagatgaaagggcgggtcgcatgtgaaatcagcagtggtgacgagctg
ttgctgacggagatgattttcaacggcctcttcaacgatctcacggtcgaacaagccacc
gccctgctgtcctgcttcgtcttccaggagaatgccagtgagatgcccaaactgaccgaa
caactagccgcacccttgagacaaatgcaggagtgtgcgaaacgcatcgccaaagtttct
gcagacgccaagctggaggtggacgaggagacgtatctgggccagtttaaacctcatctg
atggacgtggtgttcgcctgggctaacggcgccacgttcgctcagatctgcaagatgacc
gacgtctttgaagggagcatcatccgctgcatgcgtcgtctggaggaggttctgagacag
atgtgttctgcagccaaggccatcggcaacactgagctggagaacaagttcgctgaaggc
ataacgaagatcaagagggacattgtatttgctgccagtctctacctataa
DBGET
integrated database retrieval system
