Acanthopagrus latus (yellowfin seabream): 119030014
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Entry
119030014 CDS
T08233
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
alat04131
]
119030014 (vldlr)
Membrane trafficking [BR:
alat04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
119030014 (vldlr)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF
Motif
Other DBs
NCBI-GeneID:
119030014
NCBI-ProteinID:
XP_036973202
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Position
12:complement(4694750..4750644)
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AA seq
864 aa
AA seq
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MVTSTPGILLLPILICLQHCVNVHATKTECEASQFQCGNGRCIPSVWQCDGDEDCTDGSD
EGSCVRKTCAEADFVCQNGQCVPKRWHCDGEPDCEDGTDESLEICHMRTCRVNEFSCGAG
STQCIPIFWKCDGEKDCDNGEDEVNCGNITCAPNEFTCASGRCISRNFVCNSEDDCGDGS
DEVECAPSSCGPSEFQCGNTSCIPASWVCDDDVDCQDQSDESPTRCGRHPTPPAKCSSSE
MQCRSGECIHKKWRCDGDPDCKDGSDEANCPVRTCGPDQFKCDDGNCILGSRQCNGLRDC
TDGSDEVNCKNMTQCNGPEKFKCRSGECIEMSKVCNKARDCPDWSDEPIKECNLNECLLN
NGGCSHICKDMVIGFECDCTPGLQLIDHKTCGDINECLNPGICSQICINLKGGYKCECHN
GYQMDPTTGVCKAVGKEPCLIFTNRRDIRRLGLERKEYTQIVEQQRNTVALDADFNQQMI
FWADLGQKAIYSTVLDKRGEVGTHNKVIDNVQTPVGIAVDWIYKNLYWSDLGTKTISVAN
FNGTKQKVLFNRGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVASDIQW
PNGITLDLIKGRLYWVDSKLHMLCSVDLNGDNRKKVLQSSDYLAHPFALTVFEDRVFWTD
GENEAIYGANKFTGSDVVTLASNLNDPQDIIVYHELIQLSGTNWCTEKGENGGCSYMCLP
APQINKHSPKYTCVCPEGQELTADGLRCRPDPTTKDPSKDDGKALIQPHSEANVSTSIQV
DATARGSAAAWAILPVLLLAMAVAGGYLMWRNWQLRNQKSMNFDNPVYLKTTEEDLNIDI
TRHSANVGHTYPAISIVSTDDDLS
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgtccacaccggggatccttctgctgccgatactaatatgtctccagcactgc
gttaacgtccacgctactaagacagaatgtgaggccagccagttccagtgtggaaacggt
cgctgcatcccttccgtctggcagtgtgacggagacgaggactgcaccgatggcagcgac
gagggctcctgtgttagaaaaacatgtgcggaggcggactttgtgtgtcaaaatggccaa
tgtgtcccaaagcgatggcactgtgatggggagccggactgcgaggatgggaccgacgag
agcttagaaatttgccacatgcggacgtgtcgtgtgaacgagtttagctgtggagcgggc
tctacacagtgcatacccatcttctggaaatgcgacggagagaaggactgtgacaacgga
gaagatgaggtcaactgtggtaacatcacctgtgctccaaacgagttcacatgcgccagt
ggccgctgcatctcccggaactttgtgtgcaacagcgaggatgactgtggtgatggctct
gatgaggtggagtgcgctccatcctcctgtggtcccagtgagttccaatgtgggaacacc
tcatgcatcccagccagctgggtgtgcgacgatgatgttgactgccaggaccaatcagat
gagtcgccgactcgttgtggccgtcacccaacgccaccagccaagtgttcatccagtgag
atgcagtgccgctcaggagagtgtattcacaaaaagtggaggtgtgatggagaccccgac
tgcaaggatggcagcgatgaagccaactgtcctgtacgcacctgtggaccagatcagttc
aagtgtgatgatggaaactgtatcctgggcagcagacagtgtaacggcctcagagactgc
acggacggatcagacgaagtcaactgtaaaaacatgactcagtgtaatgggccagagaag
ttcaagtgtcgcagcggagagtgtattgagatgagcaaagtgtgcaacaaggcccgagac
tgtcccgactggagcgacgaacccatcaaggaatgcaatctaaacgagtgtctcctgaac
aacggcggatgctctcacatctgcaaagacatggtgattggctttgagtgtgactgcaca
cctggacttcagctcatagaccacaagacctgtggagacatcaatgagtgtctgaaccca
ggcatctgcagtcagatctgcatcaacctgaagggagggtacaagtgcgaatgccacaac
ggttaccagatggatccaaccaccggagtgtgcaaggctgttggtaaggagccctgcctg
atcttcaccaaccgacgtgacatccgtcgtctgggtctggagaggaaagagtacactcag
attgtggagcaacagaggaacacagtggctctggatgcagacttcaaccagcagatgatt
ttctgggctgacctgggccaaaaagccatttatagcactgtgctggacaaacggggagaa
gtcggcacacacaacaaagtgatagacaatgtccagactcctgtgggaatcgctgtggac
tggatctataagaacttgtactggtctgatcttggcaccaaaacaatttctgttgccaac
ttcaatggaaccaagcagaaggttctgtttaacagagggctcaaagaaccagcctccatc
gccgtggatccactttctgggtttctgtactggtctgactggggcgagccagccaagatt
gagaaatctggtatgaatggagttgacagacaggttttggtggcgtcggacatccagtgg
cccaatggaatcaccctagatctgatcaaaggcaggttgtactgggtcgactccaagctg
cacatgctttgtagtgtcgacctgaatggagacaacaggaagaaagtcctccagtcttct
gactacctggctcatcccttcgctcttactgtttttgaggatcgagtcttctggacagat
ggtgaaaatgaagcgatctacggtgcaaacaagttcactggctctgatgtggtgacgctg
gccagcaacctaaatgacccccaagacatcatagtgtaccatgagctgatccagctgtcg
ggtactaactggtgcacagagaagggtgaaaatggaggctgtagctacatgtgtctgcct
gcacctcagatcaataaacactcccctaaatacacctgtgtgtgtccagaaggacaggag
ctaactgctgacggcctacgctgcagacccgaccctactaccaaagatccctcaaaggat
gatgggaaagcacttatacaaccacactcagaagccaatgtgagcacatcgatccaggtg
gacgcaacagccagagggtctgctgcagcctgggccatactgccagtcttgttgctggca
atggcggtggcaggcgggtacctgatgtggagaaactggcaactgaggaaccagaagagt
atgaactttgacaaccctgtctacctgaagaccacagaagaagacctcaacatcgacatc
acccggcacagtgccaacgtgggacacacctaccctgcaatttcgatagtgagcacagat
gacgatttatcatga
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