Acanthopagrus latus (yellowfin seabream): 119030384
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Entry
119030384 CDS
T08233
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119030384 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119030384 (nup54)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119030384 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
119030384
NCBI-ProteinID:
XP_036973812
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All DBs
Position
12:19498356..19506486
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AA seq
571 aa
AA seq
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MAFSFGGATSNPAANTSGFSFGSFGAKTTAPTAFGFGPTATTTTAASGFGTLTAPGFGTA
ATTTAAAPATGFSFGSTNTGTFGGFGTTTTTAAAPGSTFSFSAPANATGGLFGNTQNKGF
GFSSGLGTATATGATGFGTGLGTASLGGFGGFGGIQSTQQQQGGLFGQQAQQPGQAQHSQ
LYQQVTALSAPTLLGDERDSILAKWNQLQAYWGTGKGYYSNNNPPVDFTQENPFCRFKAV
GYSCVPVSKDEDGLVVLLLNKKEADVRAQQQQLVESLHKILGSNQTLTVNVDGVKALPND
QTEVIVYVVERSPNGTSKRIPATTLFGYLEQANVKMQLTQIGVIMSVTRTELSPAQLKQL
LQNAPAGVDPIIWEQAKVDNPDPEKLIPVPMVGFKELLRRLQIQEQMTKQHQTRVDIISN
DISELQKNQATTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDEEHLRVQLDT
IQSELNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYNVDADLLREIKQHLKQQQEGLSH
LISVIKDDLEDIKLIEHGLSDSGHMRGGILS
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagttttggcggcgccacgagtaacccagcggcaaatacgtccgggttttca
tttggttcatttggtgccaaaaccaccgcaccgacagcatttggctttggccccacagcc
accaccaccaccgccgcatctggattcggcactcttacagctcctggttttggcacagct
gccaccaccactgctgctgcgccagccaccggatttagttttggctccaccaacactggc
acttttggtggctttggaacgactacaacaactgctgctgcaccaggttccacttttagc
ttttctgctcctgccaatgccacaggaggcttgtttggtaacacgcagaacaaaggcttt
gggttctcttctgggcttggcactgcgaccgctactggggcaacaggatttgggactgga
ttaggaacagctagcctgggtgggtttggaggctttggaggcatccagtcaactcagcag
cagcaaggaggtttgttcggccagcaggcccagcagcctggtcaggctcagcacagccag
ctttaccagcaggtcacggctctgtcagcacccaccttgttaggagacgagcgggactcc
atcttagctaaatggaaccagctgcaggcatactggggcactgggaagggctactacagc
aacaacaacccacctgttgacttcacacaggagaacccattctgcaggttcaaggcagtg
ggatacagctgcgtccctgtgagtaaggacgaggatggtttggtggtcctgcttctcaat
aaaaaggaggctgatgtgcgagcgcagcagcagcagctggtggagtccctgcacaagatt
ttgggaagcaaccagacacttactgtcaacgtagacggggtcaaagccctgcccaacgac
cagaccgaggtgattgtttacgtggtggagcgttctcccaacggcacctccaagcggatc
ccggccaccacactcttcggttatctggagcaggccaacgtcaagatgcagctcacacag
atcggagtgatcatgtccgtcacacgcacagagctgtctccagcacagctcaaacagctg
ctgcaaaatgctcctgcaggagtggatcccatcatttgggagcaggctaaggtggacaac
cctgatcctgagaaattaatcccggtgcccatggtaggttttaaggagcttcttcgcagg
ctgcagattcaggagcagatgaccaaacagcatcagaccagagtggatattatctccaat
gacatcagtgaactgcagaagaatcaggcgaccaccgtggccaagatcgcccagtacaag
aggaagctgatggatctgtctcacagggtgctgcaggtgctgatcaagcaggagattcag
agaaaaagtggttacgctatccaagtggatgaggagcacctccgggtgcagctggacacc
attcagtctgagctcaatgcccccacacagttcaagggtcggttgaatgaattaatgtcc
caaatccgaatgcagaatcactttggagccgtgagatcagaagagcgctacaatgttgat
gcagacctgcttagagaaattaaacaacacttgaagcagcagcaggagggtttaagtcat
ttgatcagcgtcattaaagatgacctggaagacatcaaactcatagagcacgggctgagt
gacagcggacacatgagaggaggcatcctgagctga
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