Acanthopagrus latus (yellowfin seabream): 119030943
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Entry
119030943 CDS
T08233
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119030943 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alat03021
]
119030943 (pcf11)
03019 Messenger RNA biogenesis [BR:
alat03019
]
119030943 (pcf11)
Transcription machinery [BR:
alat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119030943 (pcf11)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119030943 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
119030943
NCBI-ProteinID:
XP_036974829
LinkDB
All DBs
Position
13:26686235..26699312
Genome browser
AA seq
1670 aa
AA seq
DB search
MDCLLINGYANHKVRVGFPGSLSSKMDDKAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQISKAPSAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSVDPAWPIKPLPPTVNAGASIHVN
PKFLKQSDEVSSPPPATTPTPPPQPTPPPAPAPAPTPAPAAAPASQPAPAVSQYSLTQEQ
LIRQQLLAKQKQLLELQQKKIELELEQTKAQLVGGFVVPTSTPVSTPAAASTAPKPVSQT
APVVRPWIPPQTQTDSKPSTRDPRLNRTGPPVGSQHKEHSAGKRADATTTGSSALAPEKL
TRPDKARTQRKEVPEEKPKSKSQSPLVKSVQSKNKQVEAEIQKSAEGTKKDPRLRKRTQE
KTGEVKEDEQKEKKRCTDKKEREEAARGVEPQRLPKGKLVNGLVAKHDREESTEKAEFKT
GGNARTHARKRTRSRSRSRSPAASPKRKDRRSPKSRARSSSLSPSPSHKLGKPRRIRADE
PEHGKPGREDRLTPKKNQSESRRSKRPAEDRHSESRDSHSPRSHDGGSKENKDTSHRWRS
GWEENKHLKPSEDSHVKPGPPRHKQYSTPTRPTTPRTPKHRLSVDANLQIPEVLNSASKK
DLLRRASKRLESGEISQEDFLNMAHQIKHFFQYQEELQQQHSDSWDDSSNNFSKKQPLLT
TPPSAQPRPHDGMDAAELSYYEHKSKLRKTQVAHRAAGEEWEGEESPEEAEEGKQGEKPS
SGRSSGHPPSHKYSRASRERPGERRSKEREEPRPPPGPMIEEYNHGKEFPTLKSLPGLRF
RRRADPRESKRSEVRFWSCGVSGSRSVILQQGEREWTSPLMERQRLDDREEQKSGYNAPR
RYGPPTDSRHSDPRRPDGPPPSGTVVHRNCSSPAGLDPPVPRFERERLSPLHQKDTAEAS
PVPRFESPNSEHSDDAPLDVPLPHPHPPHPPKSILKAPARAGPLSSVRQHSDSPGHTPPH
DGGHPPSMYEGPGHMGPSRPHPSGWYEGGGPGCYDDSSRFDGPHHQVPGRFDGGGPPHHN
MPERFDGPGPHIPHGPMRGGDGMGRFDGPPHPQGPGRFDGPVDQRPPVRFEGQGPGPGHF
EGPMQHFNNMAPGPGSGPMGFQQQRPMRFDGPPNQMGPMRFDGPGPMRFDGPMQPGPRFD
MPNVSHQGGPPLYESAPGQQGPMRFAPQHNLQPPMRPMAPPIYENPMAPQQNFNMAPQRF
QEPMNPQFPAGPMPFPAQPNLQQPGSFNMQPAPPFSQPTPAPFYNPAAPAVSMQQPVNMM
TNLNQPFLPQNPVPFRQPTPQVGPQENHFGQVDVNDLLSKLISNGIIKPSQSEPTPQTGT
ETAAPAVPPVVEEEEEEPEQVEEEEEDDNLPDLTSFTIDDMKQRYESVVTKLYSGNQCCL
CSMRFTAAQTDMYADHLDWHFRQNHAGKVASKKITHRRWYYTLRDWIEFEEIADLEERAK
SLFFEKENEEEVQKSQAAAKEKEFQSVKATKDQVGESCEICQEPFETYWVEEEEDWFLKD
ALRVDDKIFHPACFEDYQNTSSYIDVTPSPNKVLTDHPLSTFIKKEEEEEEEEEGTSCAV
AAAAAAAAAAIATIAAVKQEVESEAPEPPEVKIEEPEVLTEDVQLDQNKE
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctaatcaatggttatgctaatcataaagtccgtgtaggttttcccggt
tcgctcagctcaaagatggacgacaaagcggcgagggaagatgcctgccgagagtatcag
tcctcgctggaagacctgacattcaacagcaagccgcacatcaacatgctgaccattctg
gccgaggaaaacctcaacttcgccaaggatatcgtcgcaattattgaagcgcaaataagc
aaggccccatctgccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagaataccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggatgaaaacactagaaagagtctgttcaagttgcgatcgacgtgggac
gatgtgtttcctcttaagaaactgtacgcgctggacgtccgggtcaactctgtggacccg
gcttggcccatcaagccactgccgcctaccgtcaacgccggcgccagcattcacgtcaac
cccaagtttttaaaacagtcagatgaggtgtcctctccacctcctgccaccacacccacc
cctccacctcagccgaccccaccaccagcaccagcaccagcgccgacgccagctcctgca
gcagcgccggcctcccagccggccccggccgtcagtcagtacagtctgacccaggagcag
ctgatccgtcagcagctgctggccaaacagaaacagcttctagagctgcagcagaagaag
attgaactggaactggagcagaccaaagctcagctggttggtggatttgtggtaccaaca
tcaactccagtctccactccagcagcagcaagcacggcaccgaagccggtcagccaaact
gctcctgtggtgcgaccgtggatccctcctcagactcagacagactccaagccgtccacc
agagaccctcgtctgaaccgcactggccccccagtcggctcccagcacaaagaacattct
gctggaaagagggcagacgcaaccacaacaggaagttctgctctggctcctgagaagttg
acaaggccagacaaggccaggacccagaggaaagaggtgccagaggagaagcccaagtcc
aagtctcagtctccgttggtcaaaagtgtccagagtaaaaacaaacaggtggaggccgag
attcaaaagtcagctgagggcacgaagaaagatcccagactgaggaaacgcacacaggag
aagactggagaggtcaaagaggacgagcagaaggagaagaaaagatgcaccgacaagaag
gagagggaggaggcggcacgaggagtagagcctcagaggttgcccaaagggaagctggtg
aacggcttggttgccaaacatgaccgcgaggagtccacagagaaggccgagttcaagacc
ggaggcaacgcccgaacacacgccaggaaacgcacccgctcacggtcaaggtcgcgctcc
ccagctgcctcccccaagaggaaggacaggcgttcacccaagagcagagccaggagcagc
tccttgtctccgtcgccttctcacaaacttggcaaacctcggaggattcgcgcagatgaa
cctgaacacggcaaacctggtcgagaggaccggctcacacctaaaaagaaccagtcagag
agcaggaggtcaaagcggccagcagaggatcggcactctgaatccagagactctcactcc
ccgaggagccacgacgggggaagcaaggagaacaaggacacttctcaccgctggaggagc
ggctgggaggagaacaaacacctgaagccatcagaagactctcatgtgaagcctggacct
ccgagacacaaacagtacagcaccccgactcgacccacaaccccccgaaccccgaaacac
cgcctcagtgttgacgctaacctgcagatccctgaagtccttaactctgcctccaagaag
gacctcctgcggagggccagtaagcgcctggagagtggcgagatctcccaggaggacttc
ctgaacatggcccaccagatcaaacacttcttccagtatcaggaggagctgcagcagcag
cactctgacagctgggacgactccagcaacaacttctccaagaagcagccgctactgacc
acgcccccctctgcccagccccgccctcatgacggcatggacgcagcagagctgtcgtac
tatgagcacaagtccaagctgaggaagacccaggtcgcgcaccgggccgccggagaggag
tgggagggcgaggagagtccggaggaggcagaggaagggaagcagggggagaagccgagc
agtggacggagcagcggacacccgccttcacataaatacagtcgggcgtcacgggaaaga
ccaggtgaaaggcggagtaaagagcgtgaggagccccggcctccacctgggcccatgatc
gaggagtacaaccacggcaaagagttccccactctgaaatctctcccaggacttcgcttc
aggaggagagccgaccccagagagtccaagaggtcagaggtcaggttctggagctgcggg
gtgtcagggtctcgatcagtgatacttcagcagggtgagcgagagtggacctctccgctg
atggagcgccagcgtttagacgatcgcgaggagcagaagagcggctacaatgctcccagg
aggtacggcccacctaccgactccaggcactcagacccacggaggccggatggaccccca
ccttccggcactgtggtccacaggaactgttcgagcccagctggtctggacccgccagtg
ccgaggtttgagcgcgagcggctgtcgcctcttcaccaaaaagacacggcagaggcgagc
ccggttcctcgctttgagagcccaaacagtgagcattcagacgatgcacctctggacgtc
ccccttcctcaccctcatcctccccatccgccaaaatccatcctgaaggcgccggcacgg
gccggacctctgtcttctgtccgacagcacagtgactctccaggacacacgcctcctcat
gatggaggacatcccccctccatgtacgaagggcccggacacatgggcccctccagaccc
cacccttccgggtggtacgagggtggtggccccggatgctacgatgactcgtctcggttt
gatgggcctcaccaccaggttcccggcaggtttgatggtggtggaccgcctcaccacaac
atgccggagaggtttgacgggcccgggccccacattcctcacggtccaatgagaggcggc
gatggtatgggccggtttgatggtccgcctcaccctcagggccccgggaggtttgatggt
cccgtcgatcagcggcctccagtcaggtttgagggacaaggacctggaccaggccacttt
gagggccccatgcagcactttaacaacatggctcctggtcctggatctggaccaatgggc
ttccagcagcagcggcccatgcgcttcgatggccctcctaaccagatgggcccaatgcgg
tttgacggtcctggtccaatgcgcttcgacgggcccatgcagcctggacccaggtttgac
atgcccaatgtgtcccatcagggtgggcccccgctctatgaatctgccccaggccaacag
ggccccatgaggttcgcaccccaacacaaccttcagccccccatgaggccgatggccccg
cccatctatgagaacccaatggcaccccagcagaacttcaacatggccccccagcgtttc
caggagcccatgaaccctcagttccccgcgggaccgatgcccttccctgctcagccgaac
ctgcagcagccaggaagcttcaacatgcagccggccccgcccttcagccaaccaaccccc
gcccccttctacaaccctgcagcccccgccgtcagtatgcagcagccggtgaacatgatg
acgaacctcaaccagccgttcctgcctcagaacccagtgcctttcagacagccgacaccg
caggtcggccctcaagaaaaccactttggtcaggttgacgtcaacgacctgctgtccaaa
ctcatctccaatggtatcatcaaaccctcgcagtctgaaccgacaccgcagaccggcaca
gaaacagctgctccagctgttccacctgtggtggaggaggaagaggaggagccggagcag
gtggaggaggaggaggaagacgacaacctcccagacctcaccagcttcaccatcgatgac
atgaaacagcgttacgagagcgtcgtgacgaagctgtactcagggaaccagtgctgtctg
tgcagcatgaggttcaccgccgctcagaccgacatgtacgccgaccacctggactggcac
ttcaggcagaaccatgccgggaaggtcgccagcaagaagatcacacaccgccgctggtac
tacaccctcagggactggatcgagtttgaggagatcgcagacctcgaggagcgagcgaag
agtctgttcttcgagaaggagaacgaggaggaggttcagaagagtcaggcggcggcgaag
gagaaagagttccagagcgtgaaggccaccaaggaccaagtgggagagtcgtgtgaaatc
tgtcaggaaccgtttgagacgtactgggtcgaggaggaggaggactggttcctgaaggac
gccctcagggttgacgacaagatcttccatcccgcctgctttgaagattatcagaatacg
tcgtcgtacatcgacgtgacgccgtcgcccaacaaggtgctcactgaccacccgctgagc
accttcatcaagaaagaagaggaggaggaggaggaggaggagggcacttcctgtgcagtc
gctgctgctgctgctgccgccgccgccgccatagccaccattgctgcagtcaaacaggaa
gtggagtctgaggctccggagcctccggaagtgaaaatagaggagccggaggttttaaca
gaagatgtgcaattggatcagaacaaagagtaa
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integrated database retrieval system
