Acanthopagrus latus (yellowfin seabream): 119031053
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Entry
119031053 CDS
T08233
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
119031053 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alat03400
]
119031053 (lig3)
Enzymes [BR:
alat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119031053 (lig3)
DNA repair and recombination proteins [BR:
alat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
119031053 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
119031053
NCBI-ProteinID:
XP_036975066
LinkDB
All DBs
Position
13:complement(27766491..27780033)
Genome browser
AA seq
994 aa
AA seq
DB search
MQRQIIFFAHKTVCAGLQALRTPVRCQQLLKLCRAFSAVHLNHSSLVFDKHRLVQSALAQ
PSLHQCFSTEPDMAEQRFLVEYAKRGTAGCKKCKDKIQKGIVRIGKVVPNPFSESAGDMK
EWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELINKHVSDLMAKVNASPKKK
VQAKMNTSGQLMGPPADPSTSAPRKFSGFTAAKAGSSTFSPGPSSSPAKVSQGSALSAQL
CEPQHKDCLFREFRKLCATVAEHNSYNTKTQIIEKFLRKGSGGDKFHGDLYLTVKLLLPG
VVKSVYNLNDKQIVKLFSRTFRCNQDDMVRDLEQGDVSETVRMFFEESKSFPAATKSLLT
IQEVDASLMRLAQLTKEDEQQSELESIAKKCTGNDLKCIIRLIKHDLKMNAGAKHVLDAV
DPNAYDAFKASRNLGDVIERVLRNQQDASNGSGPRKLLTVEASLMTPVQPMLAEACKSIE
YAMKKCPNGMYSEIKYDGERVQVHKNGDTFSYFSRSLKPVLPHKVAHFKEFIPQAFPGGH
SMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDAKVCLFVFDCIYFNGVSLMERPLHER
RKFLHDNMVEVPNRILFSEMKHVTRAGDLADMITRVIREGLEGLVLKDIKGSYEPGKRHW
LKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSKKWCTVTKCSGGY
DDAMLARLQKELDMIKISKDPSKIPGWFKIIKNYYPDFIIRDPEKAPVWEITGAEFSKSE
MHTADGISIRFPRMTRVRDDKDWKTATNLHQLKELFRISKENCDFKVTAGPSTSGDDKGS
SGGDSGGNSPPAPSPGRAPAKRTNTKTPPKPKAVKSEPRTPGPDAPSTKKVKKSESVHSN
GQTKAKTSQLLELKSDKTLLDIFSGVKLFLPVSTQDFDKLRRYFVAYDGDLVADYEAASA
THTLAEPEEDSRAQRVTSGWIWECIRKRRVVPPC
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcagagacagatcatcttttttgctcataagactgtttgtgcaggcctacaagctctc
agaacacctgtcaggtgtcagcagctcctgaaactgtgtcgagccttttcagctgttcat
ctcaatcactcctcattggtattcgataagcacagactcgtccagagcgctcttgcccag
ccgtccctccatcagtgtttctccacagagccagacatggcagagcagaggttcctggtg
gagtatgccaaacgaggcaccgcaggctgtaagaaatgcaaggacaaaatccagaagggc
atagtgcggataggaaaggtcgtgccaaaccctttcagcgagtcagcaggcgacatgaag
gagtggtaccatgtgaagtgtatctttgagaagctggagagagccagagccaccaccaag
aagatcgaggacatcacagatctggagggttgggaggagctgcaggacgaagacaaggag
ctcattaataaacacgtgtcagacctgatggccaaagtcaatgctagtccaaagaagaag
gtgcaggccaagatgaacaccagtggtcagctgatgggtcctcctgccgacccatctacc
agcgctccacgcaagttctcaggcttcactgctgcgaaggccggcagctccaccttcagc
cccggaccgtcgtcttctcccgctaaagtgagccaaggcagcgcgctgtcggctcagctg
tgtgagccgcagcacaaggactgcctcttcagagagttcagaaagctgtgtgccacagtg
gcagaacacaacagctacaacaccaagacacagatcattgagaagttcctcaggaagggc
tcaggaggagataagttccacggagatctgtacctgacagtgaagctgctcctgccgggc
gtcgtgaagagtgtctacaacctcaacgacaagcagatcgtaaaactcttcagccgcaca
ttcagatgcaaccaggacgacatggtgcgagatctggagcagggcgacgtgtctgagacg
gtgaggatgttctttgaagagagtaaatcattccccgcggcaaccaagagcctcctgacc
atccaggaagtagacgcctccctaatgcgcctcgcccagctgaccaaggaggacgagcag
cagagtgagctggagagtatcgccaaaaaatgcaccggtaacgacctgaaatgcatcatt
cgactaattaaacacgacctgaaaatgaacgctggagctaaacatgttttggacgctgtg
gatccaaacgcctacgatgccttcaaggcctcccgtaatctgggcgatgtgatcgagcgt
gtgttgaggaatcagcaggatgcatcgaacggatcaggaccgaggaagctgctcactgtg
gaggcctcgctcatgacccccgtccagcccatgctggcggaggcatgtaaatccatcgag
tacgccatgaagaagtgtcccaacgggatgtactctgagatcaagtatgacggggagcga
gtgcaggtccacaagaacggagacaccttcagctacttcagccgcagcctgaagccagtg
ctgccacacaaggtggctcacttcaaagagttcatccctcaggccttccctggaggacac
agcatgatactggacgctgaagtcctcctcattgacaccaacaccagcaaacctctgccc
tttgggactctgggtgtccacaagaaagccgccttccaagatgccaaagtgtgtctcttt
gtcttcgactgtatctacttcaacggtgtgagcctcatggagaggcctctgcatgaacgc
aggaagttcctccacgacaacatggtcgaagtccccaacaggatcctgttctcagagatg
aagcacgtcacgagggcaggagatctggctgatatgatcactcgggtcatcagagaggga
ctagaaggtctggtgctgaaagacataaagggcagctatgagccggggaagcgtcactgg
ctgaaggtgaagaaggattacctgaacgagggggcgatggccgacacagctgacctggtg
gtgctgggagcgttctatggaaaaggctccaacgggggcatcatgtccagcttcctgatg
ggctgttacgacccggactcgaagaagtggtgcacggtcaccaagtgctctggaggctac
gatgacgccatgttggcccggctccagaaagagctggacatgatcaagatcagcaaggac
ccgagcaaaatcccaggctggttcaaaatcatcaagaactattatccagatttcatcatc
cgcgaccccgagaaagctcctgtgtgggagatcactggagcagagttctctaaatcagag
atgcacaccgccgacggcatctccatccgcttcccccgcatgaccagagtccgcgatgac
aaggactggaagaccgccaccaacctgcaccagctcaaagagctgttccgcatctcgaag
gagaactgtgacttcaaggtgaccgctggaccgtctacgtccggagatgacaaaggttcg
tcaggaggcgacagcggaggaaactctccaccagcgccgtctcctgggagagctccggcc
aagaggaccaacaccaaaactcctcccaaaccgaaggcggtgaaatctgagcctcgtact
ccaggaccagacgctcccagcaccaagaaggtgaagaagagtgaaagtgttcacagtaac
ggacaaaccaaagctaagacgtctcagctgctggagctgaagagcgacaagactctgctg
gacatcttcagtggggtgaagctcttcctgcccgtctccacgcaggactttgacaaactg
cggcggtacttcgtggcgtacgacggagacctggtggcggattacgaggccgcctcggcc
acgcacacgctggccgaaccagaagaagacagccgggcccagagagtgacgtccggctgg
atctgggagtgtatccggaagaggcgcgtcgtcccgccctgttaa
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