Acanthopagrus latus (yellowfin seabream): 119032386
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Entry
119032386 CDS
T08233
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03013
Nucleocytoplasmic transport
alat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119032386 (upf2)
03015 mRNA surveillance pathway
119032386 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119032386 (upf2)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119032386 (upf2)
mRNA cycle factors
P-body specific factors
119032386 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
119032386
NCBI-ProteinID:
XP_036977373
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All DBs
Position
14:20041215..20059561
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AA seq
1293 aa
AA seq
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MTDVCFATISSMPAERKCSVNMDEKDVSSFSNKEKEKDRDGERRPASARDKAKEEAKMSG
KKDSGKEEKRKRLEEEKKKKEEKERRKKEEEKQKADEEQKKKEEEEKRQQEEQEKKLQEE
EAKRQREEEAALLKEKEEGHQLHQEAWERHQCRKELRNKNQNAQEGRPEEAFFSRLDSSL
KKNTAFVKKLRTLTEQQRDSLSNDFSSLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSL
FHQRYTEFAPLLLQSWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIY
EQLKNIIGTDRETHTHVSVVISFCKHCGDDIAGLVPRKVKLAAEKFSLTFPPSEIISTEK
QQPFQNLLREYFTSLTKHLKKDHRELQNTERQNRRILHSKGELSEDRHKQYEEFATSYQK
LLANTQSLADLLDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFY
ENLVDLKAFVPAILFKDNEKSGQGKDKDDGKDGRDGKDSASTTEELELELEALDITDEPL
ELEGADEAENEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMD
FCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRF
HIRKKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETC
GRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPVEKTVKKKRPP
LQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVKSYLICCMVNIWNVKYNSIHCVANL
LAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIF
RTLFSFISFGVNQDGSPSSLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQ
RYIWWKKSIDVWTKDHPFPIDIDYMISDTLELLRPKMRLSCSLEEATKQVTDLEREVLVK
LGLAMEKDGRSSAMSEGDGLDEEDDDDGDDEEGGAETEEQSGNESEMNEQEEDEGSENEE
EEREEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENL
QQRSGETVKVHQLDVAIPLQLKSQLKKGGGGQQCIGEAESDISETMQFVMLTRKGNKQQY
KILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPAN
TNRERRPRYQHPKGAPNADLIFKTGGSAIKERH
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtttgttttgctacaattagcagtatgcctgctgaacgcaagtgctcagta
aacatggatgagaaagacgttagctccttcagcaacaaggagaaagaaaaggacagagat
ggtgagagaagaccagcatctgctcgggacaaagcaaaggaagaggccaaaatgagcggt
aaaaaagacagtggcaaggaggagaagagaaagcgcctagaggaagaaaagaagaagaag
gaggaaaaggagcggagaaagaaggaggaggagaaacagaaagccgacgaggaacagaag
aagaaagaggaggaggagaagagacagcaggaggagcaggagaagaagctgcaagaggag
gaagccaaaaggcaacgtgaagaggaggcagctctcctgaaggagaaggaggaggggcat
cagctgcaccaggaggcctgggagcgccatcagtgcaggaaggaactccgcaacaagaac
cagaacgcccaagagggtcgacccgaagaggccttcttcagccgactggactcgagcctt
aaaaagaacactgcctttgtcaagaagctgcgtacactcactgaacagcagcgagactcg
ctctccaatgacttttcctcactgaacctcagcaagtacattggcgaggccgtgagctcc
gtcgtggaagccaagctgaagatctctgacgtcggctgtgcagtccacctctgctcgctc
ttccaccagcgctacaccgagttcgctcccttactgttgcagtcgtggaagaagcacttt
gaagcaaggaaggaagacaaggcgcccaacgtgagcaagctgcgcacagacctgcgcttt
attgctgagctcaccatcgttgggctcttcacggacaaagagggcctttcgcttatttat
gagcagctgaagaacattatcgggactgacagggagacacacactcacgtgtcagtggta
atcagcttctgtaagcactgtggggatgatattgctggtctggtgccccgtaaggtgaaa
ctggctgctgagaagttcagcctgaccttccctccgagcgagataatcagcacggagaag
cagcagcccttccagaacctgctgagggaatacttcacctccctcaccaaacacctgaag
aaggaccaccgggagctgcagaacactgagaggcagaacagacgtatcctacattccaaa
ggggagctgagtgaggacagacacaagcagtatgaagagtttgccacttcctaccagaag
ctgctggccaacactcagtccctggctgatctgcttgatgagaacatgccagagctgcct
caggacaagacagtgcaggaggaacacggtcctggcattgatattttcacccctggtaaa
cccggagagtatgacctggagggagggatctgggaagatgaagacgctcgtaacttttat
gagaacttggtggacctgaaggctttcgttcctgccatcctcttcaaggacaacgagaag
agtggacagggtaaagacaaggacgatggcaaagatggcagagacgggaaggattcagcc
agtaccacagaggaactggagctggagctggaggcgctggacatcacagatgaacctctt
gaacttgagggagcagacgaggctgaaaacgaagaactggccaagaaactactggatgag
caagaacaagaggatgaggaggccaacacaggctcccacctgaagctcatcgtggacgcc
ttcatccagcagcttcccaactgtgtcaacagagacctcatagacaaggctgccatggac
ttctgcatgaacatgaacaccaaatctaacaggaggaagcttgtgcgagccctcttcact
gtcccccggcagaggttggatcttctgcccttctactctcgcctggtggcaactcttcat
ccctgcatgtcagacgtggctgaggacctctgctccatgctgaagggagacttcaggttc
catattcggaagaaggaccagatcaacatcgagacaaagaataaaacggtccgattcatc
ggggaactggccaagttcaagatgttctcaaaaacagacacgcttcattgtctcaagatg
ctgctgtctgatttcacccatcaccacatcgagatggcgtgcacgttgctggagacctgc
ggacgcttcctcttcagatcccccgactctcacctgcgtaccagcgtcttactggagcaa
atgatgcgcaaaaagcaggcgcagcatcttgacgcccgctacgtgacgatggtggagaac
gcctattactactgcaacccgccgcctgtggagaagacggtgaagaagaagaggccgccg
ctgcaggagtacatccgcaagctgctctacaaggacctgtccaaggtcacaacagagaag
gtgctcaggcagatgcgtaagctgccctggcaggaccccgaggtgaagagctacctgatc
tgctgcatggtcaacatctggaacgtcaagtacaacagcatccactgtgtggccaacctg
ctggccggcctggtggcctaccaggaggacgtgggcatccatgtggtggacggagtgctg
gaggacatccggctgggcatggaggtgaaccagcccaagttcaaccagcggcggatcagc
agcgccaagttcctgggcgagctctacaactaccgcatggtggagtcagccgtcatcttc
cgcaccctcttctccttcatctccttcggggtgaaccaggacggcagccccagctcgctg
gaccctccggagcacctgttccgcatccgcctggtgtgcacgctgctcgacacctgcggc
cagtatttcgaccgcggctccagcaagaggaagctggactgtttcctcatctacttccag
cgctacatctggtggaagaagagcatcgatgtttggaccaaagaccacccgttccccatc
gacatcgactacatgatcagtgacacgctggagctgctgcggcccaagatgaggctcagt
tgttccctggaggaggccaccaaacaggtcaccgatctggagagggaggtgctcgtcaaa
ctaggcctggccatggagaaggacggccgctccagcgccatgagcgaaggcgacggtctc
gacgaggaggacgacgacgacggcgatgacgaggagggaggcgctgagactgaggagcag
tcgggcaacgagagcgagatgaacgaacaggaagaagacgaagggtcggagaacgaagaa
gaggagagggaggaagaggaggaagagaacacagactatctgactgactccaataaagaa
aatgagacagatgaggagaacaatgaggttacgatccgcggcggtggactgaagcacgtt
gcctgcgccgaggacgaggacttcattcaggctctggataagatgatgctggagaacctg
cagcagcgtagcggcgagacggtgaaggtgcaccagctggacgtggcgattcctctgcag
ctgaagagccagctgaagaagggaggaggaggacagcagtgcatcggggaggccgagtcc
gacatctctgaaaccatgcagttcgtcatgctgacacgcaaaggcaacaagcagcagtat
aagatcctgaacgtgccgctgtcctcccacctggcggcgaaccacttcaaccagcagcag
gccgaacaggaggagcgcatgaggatgaagaaactgacgctggacatcaacgagaggcag
gagcaggaggactaccaggagatgatgcagtccctcgcccagcgtccggcgccagccaac
actaaccgggagcgccggcctcgctaccagcacccgaaaggcgctcccaacgccgacctc
atcttcaagaccggaggaagtgcgattaaagaaaggcattag
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integrated database retrieval system
