Acanthopagrus latus (yellowfin seabream): 119033138
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Entry
119033138 CDS
T08233
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119033138 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119033138 (dhx36)
03012 Translation factors [BR:
alat03012
]
119033138 (dhx36)
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119033138 (dhx36)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119033138 (dhx36)
Translation factors [BR:
alat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119033138 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
DUF7428
HerA_C
Motif
Other DBs
NCBI-GeneID:
119033138
NCBI-ProteinID:
XP_036978679
LinkDB
All DBs
Position
2:11803521..11829590
Genome browser
AA seq
1090 aa
AA seq
DB search
MSYGYGGGGGRRGRRGGRGNRDGSRERWDRGGGGGSRGHSSDFDQDRGGGGGGGQRDRPP
PHLKGREIGLWYARYGAVRRKQADRRSRAVVQMDEAREQHITKLLNSVQSEQHGSARDGW
DTRASTSGNWRAAANSGGHCFFDGDEPEEEKIKSEIKNEEEEEDISVGQKATHKSQRHFT
QAVKDETPDQWDDDDEEEEQQQEEQQQQQQQQQQQQQQQQQEDKDELRKKDKDLEFLFQE
VRRDSSLDESLQRDLQRKKSDPKYKEMLKFREKLPSYGKKEELVELINSNRVLVVSGETG
CGKTTQVTQFILDDYINRGVGSMCRVVCTQPRRISAISVAERVAAERAESVGNGNSCGYQ
IRLQSRLPRRQGSVLYCTTGIILQWLRSDPLLSSVSHLVLDEIHERNLQSDVLLIIVKDL
LSARDDLKVILMSATLNAEKFSRYFGNCPMIHIPGLTFPVEEFLLEDIVELTRYRPQNKD
RRPTWKRNFWHGRNARSEKEEKETEYKESWPCYARTLQGRYSDSTIEALEMLDNDDKIDL
ELILALIRHIVLNEEEGAILVFLPGWDNISTLNDLLMAQQMFRSDRCVIIPLHSLMPTVN
QTQVFKRPPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETNFDTTNNISTMTAEWVS
LANAKQRKGRAGRVCPGKCYHLYNGLRASLLDAYQLPEIMRTPLEELCLQIKILKLGSIA
RFLEKALDAPTEKGVNLAIKNLTDLNALDHSENLTALGFHLARLPVEPHIGKLILFGALL
GCLDPALTIAASLSFKDPFFIPLGKEKMADMRRKVLSRNSKSDHLTIVNAFKGWEEAKQR
GARYEREYCWDNFLSANTLQMLHNMKGQFTEHLMNTGFVSSKDPKDPNSNVNSDNEKLIK
AVIVAGLYPKVAMIRPSHSKKRPGAKVYTQADGKVNIHPKSVNAEESEFNYAWLIYHLKM
RTSSIFLYDCTEVSPFSLLFFGGDITIQKDGEQETVAVDQWIVFRSPARIAHLVKSLKKE
LDYLLEEKIRNPAPVDWQNRQSKDCAVITAIIDLITTQEKPAGGNRGYDRAWAPRGQHIH
FNDDDDDDDD
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggatatggtggtggaggtgggaggagaggcagaagaggaggtcgaggcaac
agagatggaagcagggagagatgggacagaggaggtggaggaggctcgaggggacacagt
tccgactttgaccaggatagaggtggaggaggcggaggtggacaacgggaccgtcctcct
ccacacctgaagggccgggagattggtctgtggtacgcaagatatggagccgtgaggagg
aaacaggctgaccggagatcgcgggcagtggtccagatggatgaggccagagagcagcac
atcaccaagctgcttaactcagtccagagtgaacagcatggttcagcgagagatggctgg
gatacaagagcctctacatctggcaattggcgggcagctgcaaatagcggtggtcactgt
ttctttgatggggatgagccagaggaggagaaaataaagagcgaaattaaaaatgaggaa
gaggaggaagacattagcgtgggccagaaagcaactcacaaatcacaacgtcatttcact
caggcagtcaaagatgagactccagaccagtgggatgatgatgatgaagaagaagagcag
cagcaggaagagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcag
caggaagacaaagacgaacttagaaagaaagacaaggatctggagtttttatttcaggaa
gtacgcagagacagttcactggacgagagcttacagagagatctgcagagaaagaaatca
gatccaaagtacaaagagatgctaaaattcagggaaaagctaccatcctatgggaaaaaa
gaggagctggtagagctgatcaactcgaaccgtgtcttggtggtgagtggcgaaacaggg
tgtggaaagaccactcaggtcacccaattcatcctagatgactacatcaatcgaggcgtt
ggctcgatgtgtcgtgtggtctgcacgcagcctcgccgcatcagtgccatctcagttgca
gagcgtgtagcagcagagagagcggagagtgtagggaatggaaactcatgtggttatcaa
atccgcctgcagagccggttaccacggagacaaggttcggtcctgtactgtacaacaggc
attattcttcagtggcttcgctcagacccattattgtccagtgtcagtcacctggtgttg
gacgagatccacgagagaaacctgcagtctgatgttttgcttatcatcgtgaaggacctg
ctcagtgcccgcgacgacctcaaagtcatcctcatgagtgccacgctcaacgcagagaaa
ttttccagatattttggcaactgtccaatgatccacatccctggtttgacattcccagtg
gaagagttcctacttgaggacattgtggagttgaccaggtatcgaccccagaataaggac
cgtcgccccacatggaagagaaacttttggcacggacgcaacgccagatccgagaaggag
gagaaagagactgaatacaaggagagctggccttgttatgctcgcacgctgcagggcaga
tactctgacagtactattgaagcactggagatgttggacaacgatgacaagattgacctg
gagctgatcctggcactgattcgccatattgtgctcaatgaagaggagggagcaatcttg
gtcttcctgcctggctgggacaacatcagcactctcaatgacctgctcatggctcagcag
atgttccgatcagaccggtgcgttatcatccctttgcactccctcatgccgaccgttaat
cagacgcaggtgttcaaaaggcctcctcctggagttagaaagattgtgattgctaccaat
atagccgagaccagcatcaccatagatgacgttgtttatgtgatagatggaggcaagatt
aaggagaccaacttcgacaccaccaacaacatcagcactatgacagcagagtgggttagc
ctggccaacgccaaacaacgaaaaggacgtgccggcagagtgtgtccagggaagtgctat
catctgtacaacggtctcagggccagcctgctggatgcctatcaattaccggaaatcatg
aggacgccgctggaggagctgtgcctgcagatcaagatattgaagctcgggtctatagct
cgattcctggagaaagccttggatgctcccactgaaaagggcgtcaacctggcaatcaag
aacctgacagacctgaacgccctggaccattcagagaacctgacagctctgggtttccac
ttggctcgtctccccgtggagcctcacatcgggaaactcatcctgttcggagctctgctg
ggctgcctcgaccccgcactcaccatcgctgcttcactcagcttcaaagaccctttcttc
atacccctgggtaaagagaagatggcggacatgaggagaaaggtcctgtccagaaactca
aagagtgaccacctcactattgtcaatgccttcaagggttgggaggaagcgaaacagcgt
ggtgccaggtatgagcgggagtactgctgggacaacttcctgtctgccaatacgctccag
atgctgcacaacatgaagggccagtttactgagcatttaatgaacacaggcttcgtcagc
agcaaggaccccaaagaccccaattctaacgtcaactcagacaacgagaagttaatcaag
gctgtgatcgtagccggtctgtacccaaaggtggccatgatcagaccatctcacagcaaa
aagaggccgggggcaaaggtgtacacccaggctgatgggaaggtgaacatccacccaaag
tcggtcaacgctgaagagagcgagttcaactacgcgtggctcatctaccacctcaagatg
agaacgagcagcatcttcctgtacgactgcaccgaggtgtccccgttctctctgctgttc
tttggaggagacatcacaatccagaaagacggggaacaggagaccgttgccgtcgaccag
tggatcgtcttcagatccccggctcgcatcgctcaccttgtcaagagtttaaagaaagag
ctggactatctgctggaggagaagattcgcaaccccgcgcctgtggactggcaaaaccgg
cagtccaaagactgcgccgtcatcacagccatcatagaccttatcaccacccaggagaag
cctgcaggcggcaatcggggctatgaccgagcatgggccccaagaggacaacacattcat
ttcaatgacgatgatgatgacgacgatgattag
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