Acanthopagrus latus (yellowfin seabream): 119033368
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Entry
119033368 CDS
T08233
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119033368 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alat03400
]
119033368 (msh6)
DNA repair and recombination proteins [BR:
alat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119033368 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
BSP_II
WPP
Motif
Other DBs
NCBI-GeneID:
119033368
NCBI-ProteinID:
XP_036979260
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All DBs
Position
15:complement(10177613..10185314)
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AA seq
1389 aa
AA seq
DB search
MAKQSSIFNFFAKSPPPVSKPKPKPSPSPTEADLPSSVEKSNSSPKEQAKQAPQQQPAKT
SKAKPKSNSKPAKGGFSKLFGDKAQPVKQSATCTFSAGALVWAKLEGHPWWPCMVVPQPL
SGQQMRGRGQAQRIHVHFFDEPPTRGWVSTKYIREYQGSDSSDAKTGGVFFSSKPVIRRA
MELADAVMFDSPEKRLKMPLCTDPSDEEDEDDDDEEEMELDKSTVSDEEVSDVDGQEDVK
MRSPKVSRRSSRASTKRGNKAKRRRIIVASDSDGSGDEFKPEQAASSSEDEEEEEAVTSE
EEEDEEEESTQESEADSPVKPIKRKRPAEKPVLTKAKIPTAPSAAPKRAPAAVSSDTKSR
LSAFSAPDTFESQANGSGTGGSATVWDHEKLEWLQDGRRKDGGRRRQSEDDYDPTTLYVP
EDFLNRNTPGMRRWWQLKSKMFDTVIFYKVGKFYELYHMDAVIGVNEMGLTFMKGTWAHS
GFPEIGFGRFSDVLVQKGYKVARVEQTETPDMMEARCKTMAKPTKFDRVVKREVCRIITR
GTQTYSVLDGAPSESQSKFLLSLKEKAEEESSGQCRTYGVCFVDTSVGYFHVGQFADDRH
CSRLRTLIAHFSPAEVLFEKGNPSVETRKILKASLSSALQEGLNANSQFWDAQKTLKTLS
EADYFRETAGEEHGTGNNFLPAPLKKMTSESDSLCLTPKDGYELALSALGGCIFYLKKCL
VDQELLSMANFEEYIPVDVEMEKAAGPASFFAKTRQRMVLDGVTLANLEIFQNGSGGTEG
TLLERLDTCSTPFGKRLLKQWLCAPLCNPTSIKDRLDAVEDLMGAQAQATEVSELLKKLP
DLERLLSKIHSIGTPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKIMQEIIAVFT
PVLGDCKSTLFHQIVSLKGDKDGVFPDLSAELKRWETAFDHQKARTTGVISPKAGFDPEY
DQAHTGIKNCERELQDYLDRQKKRLGCKNMSYWGTGKNRFQIEVPDSVSERNIPEEYEVK
STKKGWKRYVTKESERLFSELQGFEEKRDAALKDCMRRLFYNFDKNYKDWKTGVECMAVL
DVLLALSRYSQGGDGAMARPELVLPEGDDQVAPFLDLTGSRHPCVTKTFFGDDFIPNDIY
IGCAGSGEEDEEKGDASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVD
RVFTRLGASDRIMSGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAV
VKELAEKICCRTLFSTHYHSLVEDYANNHAVRLGHMACMVENECEDPSQETITFLYKFIG
GACPKSYGFNAARLASLPEEVIQSGHRKAREFEKSTISLRLFKKLCQFAEDATLDNTHFA
SLVQMLNNL
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctccattttcaactttttcgctaagtctcctccgccggtctcgaag
ccgaagccgaagccgagtccctctccgaccgaggcagacctgccttcctccgtggagaag
tccaactcctctccgaaagagcaagctaaacaggcaccgcaacaacagccagccaagacc
agcaaggctaagccgaagagtaactccaagcctgcgaaaggaggattcagcaaactgttt
ggcgacaaggcccaaccagtcaaacagagcgctacatgcacattcagcgctggcgccctc
gtgtgggcaaaattggagggacacccctggtggccatgcatggtggtaccccagcctctg
agtggacagcagatgaggggaagaggccaggcccagcgcatacatgtccatttctttgat
gaacccccaactagaggatgggtcagcaccaaatatatacgagaatatcaaggttctgac
agcagtgatgctaaaacaggaggtgtgttcttcagcagcaagcctgtaatccgccgtgca
atggagctcgccgatgcagtgatgtttgacagtcctgaaaaaagattaaagatgcctctt
tgtacagatccatctgatgaggaagatgaggatgatgatgatgaggaagaaatggagctt
gacaagtcaacagtaagtgatgaagaggtcagtgatgtggatggacaggaagatgtgaaa
atgaggtcacccaaggtcagtcgacgctcatcccgtgcttcaacaaaaaggggaaataag
gccaagcggcgtcgcataatcgtagcctcagacagtgatggatcaggtgatgaattcaaa
ccagaacaagctgcgtctagcagtgaggatgaggaggaagaagaggcagttacaagtgaa
gaggaggaagatgaggaagaggagagcacacaggagtcggaggcagacagccctgtcaag
cctataaagcgcaaacggcctgcagaaaaacctgttcttacaaaggccaagatacctacc
gccccgtctgctgcaccaaaacgagctccagcagctgtgtcatctgacacgaagtctcgt
ttgtcagccttctctgctcctgacacctttgagagccaggcaaatggatccggcaccggt
ggaagtgcaacagtttgggaccacgagaagctggagtggttgcaggatggcaggagaaaa
gatggcggaaggcgacgtcagtcagaggatgactacgatcctaccaccctgtatgtgcca
gaagactttctcaacagaaacactcctggtatgcgtcggtggtggcagctcaaatctaaa
atgtttgacacagtcattttctacaaagtaggaaagttttatgagctctaccacatggac
gctgttatcggagtcaatgagatgggactaactttcatgaaggggacctgggctcactct
ggctttccggagattggctttggccgcttctctgatgtactggtgcagaaaggctacaag
gtggctcgtgtggagcagacggagaccccagacatgatggaagcacgctgcaagaccatg
gctaagcctaccaagtttgaccgtgtggtgaagagagaagtatgccggattatcacacgt
ggtacccagacttacagtgtgctggacggtgctccctctgagagtcagagcaagttcctg
ctgagtttaaaggaaaaggctgaagaggaaagctctggtcagtgccgtacgtacggagtc
tgctttgttgatacctctgtgggttatttccatgttggtcagttcgcagatgatcgccac
tgctcacgtctgcgcaccctgattgcacacttttcccccgctgaagtgctctttgaaaag
gggaacccatctgtcgaaacacgcaaaatactcaaggcctctctgtcctctgctctgcag
gaaggacttaatgcaaacagccagttctgggatgctcaaaagactctgaaaaccctttcg
gaagcagattacttcagagagactgctggcgaggaacatggaacggggaacaatttcctt
cccgctcctctaaaaaagatgacctctgagagtgattctctgtgccttactcctaaagat
ggctatgagctggcactgtcggcgctgggtggatgcattttctacctgaagaagtgtctg
gtagaccaggagctgctctccatggccaactttgaagaatatatccctgttgatgtcgag
atggagaaagctgcgggacctgccagcttctttgcaaagactcgtcagagaatggtcctt
gatggagtgactctggcaaacctggaaatctttcagaatggatcaggaggaacagaaggg
acactgttggagcgcttggacacctgctctaccccgtttggaaagaggctgctgaagcag
tggctctgtgctcctctctgcaaccccacatccatcaaggaccgactggatgcagtggaa
gacctgatgggagctcaggcccaggccactgaggtttcagagctgttgaagaagcttcca
gatttagagcgtcttctgagtaaaatccacagcattggtactcctctgaagggccaggat
caccctgacagcagagcagttctctatgaggaggtcacatacagcaaacgcaagatagca
gacttcctgtcagcactggaaggtttcaaaattatgcaggagattattgccgtcttcaca
ccagttttgggtgactgtaagtccacattgttccatcaaattgtcagtctgaagggtgat
aaggacggcgtcttccccgacctctctgctgaactcaagcgctgggagacggccttcgac
caccagaaagcccgcactaccggtgtcataagccctaaagctggcttcgatccagaatac
gaccaggctcacactggaatcaagaactgtgaacgagagctgcaggattacctggataga
cagaagaagagactgggctgtaaaaacatgtcttactggggaactgggaaaaatcgtttc
cagattgaggtgcctgacagtgtctcagagaggaacattcctgaggagtacgaggtcaag
tccacaaagaaaggctggaagcgttacgtgacaaaagagagtgaacgactgttctcagag
ctgcaagggtttgaggagaagagagacgctgccctgaaagactgcatgaggaggctcttc
tacaactttgacaagaactacaaagactggaagactggtgtggagtgcatggcagtgctg
gatgtgctgctggctttgtcacgctacagccagggtggagacggagccatggccaggcca
gagctggtgctccctgagggtgatgaccaggttgcgcctttccttgacctcactgggtcc
cgccacccttgtgtcaccaagaccttttttggcgatgacttcatccccaatgacatctac
atcggctgtgctggtagcggtgaagaggacgaggagaaaggtgatgcctcttgtgtcctg
gtcacagggcccaacatgggcggaaagtctactctcatgagacagtgtggacttgtgatc
atcctcgctcagctgggttgttatgttccagctgaaagcctgcgcttcactccagttgac
agagtcttcactcggctgggagcctcggatcgcattatgtctggagagagtaccttcttt
gtggagctgagtgagactgccagcatcctgcaccacgccactaaacactcccttgtgctc
ctggatgaattaggaaggggcacagccacatatgatggcacagcgattgccagtgcggtc
gtgaaggagcttgctgagaagatctgctgccgcacgctcttctcaacacattaccactcc
ctggtggaggactacgccaacaaccatgctgtgcggttgggccacatggcgtgcatggtg
gagaatgaatgcgaggatccaagtcaagaaaccatcacattcctttacaagttcatcggt
ggcgcttgtccaaaaagttatggcttcaatgctgctcgacttgccagcctgccagaggag
gtcatccagtcaggacacaggaaggcccgagagtttgagaagagcaccatcagcctcaga
ctcttcaagaagctctgccagtttgctgaagatgccacactggacaacacacacttcgct
tcacttgttcagatgctcaacaacctgtag
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