Acanthopagrus latus (yellowfin seabream): 119033789
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Entry
119033789 CDS
T08233
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119033789
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
BSMAP
Motif
Other DBs
NCBI-GeneID:
119033789
NCBI-ProteinID:
XP_036980258
LinkDB
All DBs
Position
1:complement(30324001..30343999)
Genome browser
AA seq
1517 aa
AA seq
DB search
MDNLTTATTVISGGGAGGSKDLSLSVVGSGGKAASGGSSSTSSSVLITSSSSHSASGSRA
GHGTGAVSITTIGAVSSGRGSSAASGGSAAGFRSAGGGSSSISSSFANGGRDGKGEGGLG
AVTVSKVTKSSHASGGSAEVKKGSSSGIKYSPVPKERKSVTTMASALSDVFDESSSTNSS
PEYNRKEYSTTIATSSPATRGRAQSRESEIRARLQSASPTASWTELGDVKRLLRGNISTS
TSPTQSPNNTLPIPKKASTDTRTMSESASTDQYGSIWSGGVSSSYSYNTNPNNLSTSSTL
YQSGGVQNNLTFSSPPVNSGLSAGSTVPVYGVQNNLVTTSPTVLSPTGSNAHFVYGVQKN
ASSTGFITTTVSPSGPTHEEASAKDLKFVMIEKENAPVNQTERLVMTKDTGKQFMTAAPA
SASAPYSEDSLKREKQTLSSGTMEEGTDAKSATVKVATKDKATYAEIHEDKSGFSFGFCS
CCSWWKWLLGLLLSLLLLLGLLFGLIALGEEVKRLKNRVDALEAITGTTSARTSHLSAAS
GINIIDPLDSSYIDRSSSGSTLTHSDNGITLGAAGPGAGHGSAQDSAALQRTIQQLVRTE
LRSDAVRETLAYSLKGERGQPGAKGDPGPLGAKGDSGFPGLPGPPGQMGHPGLEGPRGTK
GSAGEPGPEGPPGQRGREGQMGPRGEAGPPGFGEKGQQGEPGRTGPAGAAGPVGPKGATG
EPGEVGSQGAPGAKGFPGEAGAPGEKGDRGTPGLPGTKGDHGERGLRGPAGEPGQLGPQG
PSGAKGSKGTAGETGSMGLPGVRGPPGFAGDIGPPGPPGIQGPPGIAGIPGQPGIKGEPG
SPGKIITPVGSDTVTVPGPPGPAGPPGPAGNPGLSGPIGPAGIPGQPGPKGEQGEKGEKG
EKGAQGNPGEPGISTTSSGTDSATQTAEVSSVSGLPGPPGPPGPPGAPGPQGPSGEAKPG
PPGRRGPPGQPGVGSPGPPGERGEPGSFVPTSETFFAGPPGPPGPAGPQGPEGARGGQGY
QGEPGQPGLPGSPGEPGAGFPGQPGARGPPGPSGPEGPQGPKGDVGVPGPPGAPGVSAGS
SYGPAPPGPQGPPGLPGPPGRDGSGSGSTDVGQYIAEYLQSDSIRQYLAGPPGPPGPQGA
PGASGSARDVPVDDLATRVMAYIQSTGRGYDGTPGPPGPPGSPGFPGSPGSISVNDIINL
LQREDVRRYVSGPPGPPGPPGDTDHGSYRINTQEVANRVLSLMNERGVVGAPGPQGPPGA
PGPPGNSLSTGYQVHVGPQGPPGPPGIPGPQGPQGPQGPQGPPGIPSPQGYGTYLTSEIR
DYLQSVAFRGPPGPPGPQGPEGPPGQISGLVSYAEHANRQALRAELQEYIKSDNSRAAMF
GLPGPPGPPGPPGHKGEPGLNSASDWNPDTKEYINMAVKVTDYIKSYGLLSDGERSNNER
ATQGPPGPPGPPGPPGYSRLFGSYENVTDLVEYFKTHGAIVGPPGRPGQKGDMGLPGPKG
ERGESLITRRRRRDVGV
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaactacagccacgactgtcatctccggtggaggtgctggaggtagcaaa
gatctttccctgagtgtggtggggtctggtggaaaagctgcatcaggaggctctagcagc
acgagcagctcagttctgatcacatccagcagctcccacagtgccagtgggtccagagct
ggacatggcactggagctgtcagcatcactactataggagctgtcagctcaggtagagga
agttcagcagcctcaggtggttcagcggcagggttcaggtctgctggaggggggtcctcc
agcatttcgtccagttttgcaaatggtggcagggatggaaaaggggaagggggtctcggt
gctgtgacagtttcaaaagtgacaaagagcagccacgcttcaggaggatctgcggaagtg
aagaaaggatcgtcctctggaatcaaatactcacctgttcccaaggaaaggaagagcgtg
accaccatggcttcagctctctcagatgtctttgatgagagttcaagcacaaactcttct
ccagagtataacaggaaggagtacagcaccacgattgcaacttcgagtcctgccaccaga
gggagagctcagagcagagagagtgagatcagggccaggcttcagagtgcttctcctaca
gcaagctggacggagctgggtgacgtgaagcgtctgctgagaggaaacatctccaccagc
accagccctactcagtcccccaacaacacgctgcccatccccaagaaggccagcacggac
accaggaccatgtctgagagcgccagcacagaccaatatggcagcatttggtctggaggt
gtgagcagcagctacagctacaataccaaccccaacaacctgtccacttcctccaccctc
taccagtcaggaggagttcagaacaacctgacattcagctctcctcccgtgaacagtgga
ctgtctgccggcagcactgttcctgtgtatggtgttcagaataacctggtcaccaccagc
cccacagtcctctcccccactggaagcaacgcacattttgtttatggtgtgcagaaaaat
gcatccagcactggattcatcacaaccacagtgagtcccagcggtcccactcacgaggaa
gcctcggccaaagatttaaagtttgtgatgatcgagaaggagaacgctcctgtcaaccag
acagagcgcctggtcatgaccaaagacacggggaagcagttcatgactgctgcacctgct
agtgcctctgctccctactcagaagactcactgaagagagagaagcaaacattgtcatct
ggcacaatggaggaaggaacggatgccaaatctgcaaccgtaaaagttgctaccaaagac
aaagccacctatgcagagatccatgaagataaatcaggcttcagctttggcttctgctcc
tgctgcagctggtggaagtggctgcttggcctcctgctcagcctgctcctcctcctcggc
ctcctcttcggactcattgctttgggtgaagaagtgaaacgcctcaagaaccgcgtggat
gctctcgaggccataactggcactacctcagccaggaccagccacttgtcagctgcctct
ggcatcaacatcattgacccgctggactcatcgtacatcgacaggagttcttctgggtca
accctcacacactctgacaatgggatcaccctgggggccgctggtcctggtgcaggacat
ggatcagcacaggacagcgctgccctgcagaggaccatccagcagctggtcaggactgaa
ctgcgatcagatgctgtaagagaaacacttgcatactcattaaaaggggagagaggacaa
ccaggagcgaaaggtgacccagggccgctgggagcaaaaggtgacagcggctttcctggc
ctgccaggtcctcctgggcagatgggtcacccaggattagagggaccgaggggaaccaag
ggaagtgcaggagaaccaggtccagaggggccaccagggcagagaggccgggagggacag
atgggcccccgcggtgaagctggaccaccaggttttggagagaaaggacaacaaggtgag
ccaggacgtactggtcctgctggtgctgctggacctgtggggccaaaaggtgccactgga
gagcctggtgaagtaggaagtcaaggtgcaccaggtgcaaaaggtttcccgggtgaagct
ggagctccaggagaaaagggtgatagaggaacaccaggtctgccaggaaccaaaggagat
catggagagagaggactacgtggaccagcaggtgaaccaggacagcttggacctcaagga
ccttctggagcgaagggatctaagggaactgcaggtgaaacaggttccatgggactccct
ggtgtgagaggaccacctggatttgctggggatattggtccaccaggtcctcctgggatt
caaggacccccaggtattgctggaattccaggacagcctggtattaaaggtgaaccagga
tcacctggtaaaatcatcactccagttggctctgatactgtgactgtccctggaccacca
gggccggctggtcctccaggtcctgctggaaaccctggtctgtctggtcccattggccct
gctggtatcccaggacaacctggtcctaagggagaacaaggagagaaaggagaaaagggg
gagaagggagcacaaggaaaccctggtgagcctgggatcagcaccacgagttcaggaact
gacagtgccacccaaacagccgaagtttcctctgtgtctggactgcctggcccaccagga
cctccagggcctcctggagcaccgggtcctcagggtccttctggtgaggctaaaccgggt
cctccaggacgcagaggtcctcctggacagccaggtgttggttcccctgggcctccggga
gagagaggagagcctggcagctttgtgccaacctcagaaaccttctttgctggaccccca
ggacccccaggacccgcaggcccacagggtccagaaggtgcccgagggggacaggggtac
caaggtgaacctggtcagccaggtcttccagggagtccaggggaaccaggtgctggtttc
ccaggtcagcctggagctagaggccctccaggtccatcaggaccagaggggccacaagga
cctaaaggtgatgtaggagtccctggccccccaggagcccccggagtatctgccggtagc
tcatacggtcctgctcccccaggccctcaagggccacctggactgcctggtccacctgga
agagatggaagtgggtctggatcaaccgatgtgggccagtatattgcagaataccttcag
agtgacagcatcaggcagtacttggctggacctcctgggccccctggtcctcaaggggct
ccaggtgcttcagggtctgcaagggacgtgccggttgatgatttggctacacgagttatg
gcttacatccaaagtacaggtagaggatatgatgggactcctggtcctccaggacctcca
ggttcacctggctttccaggttcacctggctccatctctgtcaatgacatcatcaaccta
ttgcaacgagaggatgtgaggagatatgtttctggtcctcccggtccaccaggacctcct
ggagatacagaccatggcagctacagaatcaacacccaggaggtggcaaatcgtgtcctc
agcctcatgaatgagaggggggtggtaggtgctcctggaccacaagggcctcctggggct
ccaggtcctcctggaaactcgttatcaactgggtatcaagtacatgtgggccctcaaggg
cctcctggccccccaggtatccctggtccacaaggtcctcaaggtcctcaaggtcctcaa
ggtccacctggcatacctagcccacaaggatatgggacctacctcacttcagaaatccgt
gactaccttcaaagtgttgccttcaggggaccaccaggcccccctggtccccagggacct
gaaggaccccctggtcaaataagcggattggtttcctatgctgagcatgccaacagacag
gcgctcagagcagaactgcaagaatatatcaagagtgataattcaagagcagctatgttt
ggacttcctggaccaccaggccctcctgggcctccaggacacaagggagagccaggccta
aacagcgccagtgactggaacccggataccaaagaatacatcaacatggctgtcaaagta
actgattacattaaatcttatggtctgctcagtgatggtgaacggagcaacaatgaacgc
gccacccaagggccgccgggaccacctggccctccaggtccccctggatacagccgattg
tttggttcctatgaaaacgtcactgatttagtggaatacttcaaaacacatggtgccatt
gtggggccgcctgggagaccaggacagaaaggggacatgggattaccaggaccaaaagga
gagagaggagaatcactgatcactaggaggaggaggagggacgttggtgtttaa
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integrated database retrieval system
