Acanthopagrus latus (yellowfin seabream): 119034329
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Entry
119034329 CDS
T08233
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
alat03036
]
119034329 (dicer1)
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
119034329 (dicer1)
microRNA pathway
RISC loading complex
119034329 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
DSRM_2
dsrm
Motif
Other DBs
NCBI-GeneID:
119034329
NCBI-ProteinID:
XP_036981113
LinkDB
All DBs
Position
16:19077772..19101703
Genome browser
AA seq
1913 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGHYQENAKRTVFLVNTALSVVQQAAAVRTHSDLQVGEYIDLEET
SAWTDQQWSQEIIEKQVLVMTCHIFLYILKNKILQLSKINLVVFDDCHLAITDHPYCEIM
KLFEGCSGSPRVLGLTASILNGKCDPSELEQKIQNLERILRSNAETATDLVVLDRYASQP
REVVLDCGPYSDKSGLSTRLQVELEEALHFLNDCNISVAREDRDPTFISKQVLTDCWAVL
QVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKVHALCEEHFSPASLDL
KFVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADSERTKAFEEDLTTYKAIEKILRNKCSKSVEVSEFEVEQVMDDDNI
LPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTAETRDGRFQSTLYLP
INSPLRVPVKGPIMNCTRLAEKAVALVCCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLRDSYAVPEQTYYLYVIGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSDFTLSAVQLDLITRLH
QYIFSHILRLEKPALEFKPTLADSAYCVLPLNVVGDSDTLDMDFKFMEDIEKSEARTGIP
TTQYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASEAGVGAQTLPPDFR
YPNLDFGWKRSIDSKTFISCPESCCDDGEGLCRHQETVTPEPSSVTPPRSHHSPLPEQGP
LTALEPGEATCTRNLINGTALLANCDDDGHQDEHLHQYVNCQCSQPSSPELQSPESIQTT
TSVPVQPSHSLKKPSSSPPQPSDECRPGRTSDHTNKATSVCSSAATGSTAPTAPTAPSTD
LVTVLQHRSQAGDSPKSLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLF
CTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKS
STDKLDSEEAKEELLANGQSGNDYDDDDEEVDEVDEVDEEGELMLKDEPKDEVNMEDDLE
YYKEHIKFIDNMLLGSGAFGKKISLSGFPPPLTPTSGPSPAMESPYEWKAPKKPLHPTTA
HYPSEPAPSGPSAEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGAELGKQSIS
YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPLERGTLTGAVVQS
RQTTTINLCYGWLKIPPRCMLAHPDAERTLNHLISGFENFERKINYTFQNKAYLLQAFTH
ASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLA
VKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMG
DIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSP
AERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN
NT seq
5742 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctacagcttgtcacccctgccacttcacccatggggcctttctttggtctg
ccgtggcagcaggaggctatccatgataacatctatacgcctaggaaatatcaggtagaa
cttcttgaagcagctcttgaacataatactatcgtctgcttgaatactggctcagggaag
acctttattgcagtacttctaacaaaagagctctcccaccaaatccgtggacattaccaa
gaaaatgcgaagaggactgtttttctggtgaacacagctctgtctgtagttcagcaagca
gctgcagtcaggactcactctgacctccaggtgggagagtacatagatttggaggagacc
tccgcatggactgaccaacagtggagtcaagagataatcgagaaacaggtgctggtcatg
acttgccacatattcctgtacattctgaagaataaaatcttacaattgtctaaaatcaac
ttggtggttttcgatgattgtcacctggccatcactgaccacccctactgtgagataatg
aagctgtttgaaggatgctcgggcagtcctcgtgtcctcgggctcacagcctccattctg
aacggaaagtgtgacccatcagaattggagcaaaagatccagaatttggagagaatcctg
aggagcaatgctgaaactgccactgaccttgtggtcctggacagatatgcctctcagcca
agagaagtggtgctggactgtggcccgtactcagataagagtggcctctccacccgtctg
caggtggagctggaagaagctctccacttcctgaacgattgcaacatatctgttgccaga
gaggaccgtgatcccacattcatctccaaacaggtcctgacggactgctgggctgtgctg
caggttctgggaccctggtgtgcagataaggcagcaggcatcatggtgcgggagctccaa
aaatacattaaacacgagcaggaggagctaaaccgcaagttcctgctcttcaccgacacc
atcctgcgcaaagtgcacgccctctgcgaggagcacttctcccccgcctcactggacctc
aagttcgtcactccgaaggtcctccgactgctcgagatcctgcatgaatacaagcccttt
gagcggcagcagtttgaaagtgtggagtggtacaacaaccgcaaccaagacaactatgtg
tcctggagtgactccgaggatgaggatgaggatgaggaggtggaggccaaagagaggccg
gaagccaattttccctcaccgttcaccaacatcctgtgtgggatcatctttgtggagagg
cgatacacggcggtcgtcctcaatcgtttgatcaaagaggcggggaaacaggacccagaa
cttgcttacatcagcagcaacttcatcaccggccacagcatcggcaagaaccagccgcgt
aacaaacagatggaggtggagttcaggaaacaagaggaggtccttcgcaaattccgggct
catgaaaccaatctgctgattgccaccagcattgtggaggaaggtgtggatattccaaag
tgtaacctggtggtgcggttcgacttgcccacagagtacaggtcctacgtccagtccaaa
ggcagagctcgggcccctgtctccaactacatcatgctggctgacagtgagaggaccaaa
gccttcgaggaagatctcaccacctacaaggccatagagaagatcttaaggaacaagtgc
tccaagtcagtggaagtgagcgagtttgaagtggagcaggtgatggacgatgacaacatc
ctcccgccctacgtgctgcgatctgaggatggaggtccgagggtcaccatcaacacagcc
atcggacacattaacaggtattgtgctcggctgcctagtgatccctttacccacttggca
ccaaagtgcagaactgctgaaacgcgtgatggacgcttccagtccacgctctacctaccc
atcaactcccctctgcgagttcctgtcaagggtccgataatgaactgcaccagactggca
gagaaagcagttgcattagtatgctgtgagaaactccacaaaataggtgagctggatgat
cacctgatgccggttgggaaggagacagtgaagtatgaggaggagttggaccttcatgat
gaagaggagaccagtgtaccaggccgacccggctctaccaagaggaggcagtgctaccct
aaagccataccagagtgtctgcgggacagttacgctgtaccagagcagacttactaccta
tatgtgattgggatggttctcaccacccctctccctgatgaactcaacttccgcagaagg
aagctctacccaccggaggacaccaccaggtgcttcggcatcctgactgccaaacccata
cctcgaatcccacatttcccggtgtacactcgctcgggtgaggtgaccatctccatcgag
ctgcagaaatctgacttcacactcagcgcggtgcagctcgacctcatcacccgcctacac
cagtacatcttctcccatatcctccgcctggagaaacctgccctggagttcaagcccaca
ctggctgactcagcttattgtgttctacctctgaatgttgttggagactctgatacacta
gatatggactttaagttcatggaggacatcgagaagtctgaggcccgcaccggcattcct
accactcagtacaccaagcagaaccccttcaccttcaagcttgaggattaccaggatgct
gtcatcattccaaggtatcgcaacttcgaccagcctcatcgcttctatgttgctgacgtg
tatacagacctgacaccgctcagcaagttcccatcaccagagtatgagacatttgcagag
tactacaaaaccaagtacaacctggacctgtccaacctgaaccagccgcttctggacgta
gaccacacctcctccagactgaacctgttaacccctcggcatctgaaccagaagggcaaa
gccctgcccctgagcagtgcagagaagaggaaggccaagtgggagagtctgcagaacaaa
cagatactggttccagagctgtgtgccatccaccccatccctgcctccctgtggaggaaa
gcagtgtgtctgcccagcatcctctaccgcctccactgcctgctgacggccgaggagctc
agagcccagacagccagcgaagctggagtgggagctcagaccctgccccctgacttcagg
tatccaaacctggacttcggttggaagagatccatcgacagcaaaacgttcatctcctgt
cctgagtcctgctgcgatgatggtgagggtctctgtaggcaccaagagactgtaacccct
gagcccagttctgtaacacctcccaggagtcaccactctcccctgcctgagcagggcccc
ctcacagcccttgagcccggagaagccacctgcacaaggaacctaataaatggcactgcc
ctactcgccaactgtgacgatgacggccaccaagatgagcaccttcaccaatatgtcaat
tgccaatgctcccagcccagctctcctgagctgcagagccctgaatcaatacaaaccact
acctcagttcctgtgcagccctctcacagcttgaagaagcccagctccagtcctccgcag
cctagtgatgaatgtagacctgggaggacctcagaccacaccaataaagctacctcagtc
tgcagcagcgcagcaacgggttccactgctcccactgctcccacagcaccttctacagac
ctggtcactgtcctccagcacagaagccaggcaggagactctcccaaaagcctggggccc
aacccaggcctcatcctacaggccttgactctatctaacgccagcgacggctttaacttg
gagcggctggagatgctgggagactctttcctcaagcatgctatcaccacatacttgttc
tgcacttaccccgacgcccacgagggacggctcagctacatgcgcagcaagaaggtgagc
aactgtaacctgtaccgtctggggaagaagaaggggctccccagcaggatggtggtgtcc
attttcgacccccctgtgaactggctgcctcccggctacgtggtcaaccaggacaagagc
agcacagacaaactggactcagaggaggccaaagaggagcttctcgccaacgggcagtct
gggaatgactatgatgatgatgacgaggaggtggacgaggtggacgaggtggacgaggag
ggtgagctgatgctgaaggatgagccaaaggatgaagtcaacatggaagatgatctggag
tattacaaggagcacatcaaattcatcgacaacatgttgttgggatctggtgcctttggt
aagaagatctctctgagcggcttccctccccctctcaccccgacctctggcccctctccc
gccatggagtccccatatgagtggaaggcccccaagaagcccctccatcccaccacggcc
cactacccctcggagcctgcgccgagcgggccctctgcagaggagtttgattacagctca
tgggatgccatgtgctacctggatccaagcaaggcaggagaggaggacgactttgtggtg
ggtttttggaatccatcggaagagaactgtggcgccgagcttggcaagcagtccatctcc
tacgacttgcacacagagcagtgcatcgccgacaagagcattgctgactgtgtggaggct
ctgctgggctgctacctgaccagctgtggagagagagctgcccagatgttcctctgctca
ctgggcctcaaggtgttaccattggagagagggaccctgacaggagcggtggtgcagagc
cgtcagaccacaaccatcaacctgtgctatggctggctgaagatcccgccacgctgcatg
ctggctcatccagacgcagagcgaactctaaatcacctcatctccggctttgagaacttt
gaaagaaagatcaactacacctttcagaacaaggcttacctcctgcaagccttcacccat
gcttcctaccattacaacaccatcacagattgttaccagcggctggagttccttggtgat
gcaattctagactacctcataacaaagcacctttatgaagacccgcggcagcactctcct
ggcgtgctgaccgacctgcgctcagcactcgtcaacaacaccatctttgcctctctggcc
gtcaagtacgactaccacaagtacttcaaggccatctcacccgagcttttccacgtcatc
gatgactttgtgcagttccagttggagaagaacgagatgcaaggcatggactctgagctg
cgccgctctgaagaagacgaggagaaggaggaggacatcgaggtccctaaagctatggga
gatatctttgagtcgctagcaggagcaatttacatggacagcaggatgtctttggagacg
gtgtggcaagtgtattaccccatgatgaggccacttatagagaaattctctgctaatgtg
ccacgctctcctgtgagggagctgctcgagatggaaccagaaacggccaagttcagcccg
gcagaacgaacgtatgacgggaaggtccgggtgacggtagaggtcgtcggtaaaggcaag
tttaaaggagttggccgcagctaccggatcgccaagtctgcggcagcgcgacgagctctg
cgcagcctcaaagccaatcaacctcaggtccaaaacaactga
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integrated database retrieval system
