Acanthopagrus latus (yellowfin seabream): 119034492
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Entry
119034492 CDS
T08233
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03082
ATP-dependent chromatin remodeling
alat03083
Polycomb repressive complex
alat04110
Cell cycle
alat04330
Notch signaling pathway
alat04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119034492
03083 Polycomb repressive complex
119034492
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
119034492
04350 TGF-beta signaling pathway
119034492
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
119034492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
alat03036
]
119034492
Enzymes [BR:
alat01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
119034492
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
119034492
HDAC complexes
Sin3A-HDAC complex
119034492
BRAF-HDAC complex
119034492
REST complex
119034492
SHIP complex
119034492
MiDAC complex
119034492
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
119034492
Heterochromatin formation proteins
Other heterochromatin formation proteins
119034492
Chromatin remodeling factors
NuRD complex
119034492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
119034492
NCBI-ProteinID:
XP_036981449
LinkDB
All DBs
Position
16:complement(17490133..17494585)
Genome browser
AA seq
490 aa
AA seq
DB search
MALTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSGGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDTSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEDDPNKRISIRAHDKRIACEEE
FSDSEDEGEGGRRNAASFKKVKRAKTEGEKEGEEKEKKGEEETKEVKEEEKVPEEEKMDT
SKPKEESKTP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttacttcccaaggaacaaagaaaaaagtttgctactactatgacggtgatgtt
ggaaattactactatggtcaggggcaccccatgaagcctcaccgaatccgcatgactcac
aacctgttgctcaattatgggctctacagaaagatggagatatatcgtccacacaaagcc
agcggagaggaaatgaccaagtatcacagcgatgattacatcaaattcctgcgttcaatc
cgaccagacaacatgtcagagtacagcaaacagatgcagagatttaatgtgggagaggac
tgtccagtgtttgatggtttattcgagttctgccagctctcaggagggggctctgttgct
ggcgccgtgaagctgaacaaacagcagacagacattgctatcaactgggctggaggcctg
catcacgccaagaagtctgaggcctcagggttttgctatgtcaacgacatcgtactggcc
attctggagttactgaaataccaccagagagttctctacatagatattgacatccatcat
ggggatggcgtggaggaggctttctacaccacagaccgcgttatgaccgtttccttccac
aaatatggggagtacttccctggcacaggcgacctgagggatattggtgctgggaagggt
aaatactatgctgtgaattacccactgagggatgggattgacgatgagtcatatgaagcc
atattcaaaccgatcatggccaaagtgatggagatgtaccagcccagtgcagtggtcctg
cagtgtggagctgactctctgtcaggagacaggctcggttgctttaacctcaccattaaa
ggccatgccaagtgtgtggagtacatgaagagcttcaacctgccactgctgatgctgggt
ggaggcggctacaccatccgtaatgtggctcgctgctggacgtacgagactgctgtagcc
cttgatacctccatccccaacgagctcccatacaatgactactttgagtactttggacca
gacttcaagctgcacatcagcccctccaacatgaccaatcagaacaccaacgattacctg
gagaagatcaagcagcgcctgtttgagaacctgcgtatgctgccccatgccccaggagtt
cagatgcaggccatccctgaggatgctgtacaggaggacagtggagatgaggaggaggac
gaccctaacaaacgcatctccatccgtgctcatgacaagaggatagcgtgtgaggaggag
ttctctgactcggaggatgaaggcgaaggaggccgcagaaatgcagccagcttcaagaaa
gtcaagagagccaaaactgaaggagagaaagagggagaagaaaaggagaagaaaggtgag
gaggaaacaaaagaagtaaaagaagaagagaaggtgccagaagaggagaaaatggacacc
tcaaagcctaaggaggagtccaagacaccttga
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