Aulosira laxa: NIES50_19920
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Entry
NIES50_19920 CDS
T09879
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
alax
Aulosira laxa
Pathway
alax03410
Base excision repair
alax03430
Mismatch repair
alax03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
alax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES50_19920
03430 Mismatch repair
NIES50_19920
03440 Homologous recombination
NIES50_19920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alax03400
]
NIES50_19920
DNA repair and recombination proteins [BR:
alax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NIES50_19920
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NIES50_19920
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES50_19920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAZ73427
LinkDB
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Position
complement(2404258..2406405)
Genome browser
AA seq
715 aa
AA seq
DB search
MLDIAPSETSKPRRRLPNQRWQIYPQKAEFAQKLAISNHISPIVSQLLINRGIETLKAAQ
AFLEPESLILPAPLEEFPDLALSVELLQNAIASSEKIAICGDYDADGMTSTALLLRSLRA
LGAKVDYAIPSRMHDGYGINKRIVEEFHSEGVGLILTVDNGISAVEPIARARELGLKVIV
TDHHDIPQQLPPANAILNPKLIAESSPYRSVAGVGVAYILAVSLAQQLGETRGLIQPMLA
LFTLGTIADLAPLIGVNRRWVKRGLQLLPKSHLPGIQALIQMAGVQAREQGDKGTRGQGE
GGQGVYSSSSPLSSSSPSSPPNTKSLKPEDIGFKLGPRINAIGRIGDPQIVIDLLTTDDM
GIALERAMQCESVNQQRQEMCEQIEQEAIAYVETEFITSLPQDRVLVVVQPNWHHGVIGI
VASRLVERYGVPVFIGTYEDDTHIRGSARGIPEFNVFEALQACHDLLGKYGGHKAAGGFS
LPAPNLAKLRSRLIEFANQCLEPQHLKPLLKIDTQVNFSEINHQLYQQLNTLHPCGIDNP
DPVFWTPNVQVVEQQIVGKGHIKLTLAQTIEQQQYKIKAIAWRWRDYYPLPSRVDVAYKL
RENHFNGNTAIEMELIGVRLPTQSHLFFRSSTRPLTTTFEYKQRHYTCGIFQQNSLPELR
IKNSEGKVLVMQPGHTIGLLGNSREDAKEVDVCEPQYDNIIQAALQALSVLSSKS
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacattgctccctcggaaacatcaaaacctcgcaggcgcttaccaaatcagcgt
tggcaaatttacccacaaaaggctgaatttgctcaaaagttggctatatccaaccatatt
tcaccaattgtcagccagcttttgattaaccggggtattgaaaccctaaaagcagcacaa
gcctttttagagccagaatcgttaattttacctgcaccattagaagaatttcccgattta
gcgctgagtgtagagttactgcaaaatgcgatcgcttcatcagaaaaaattgccatctgc
ggtgattatgatgctgatggaatgactagcacggctttactattgcggagtctccgcgct
ttgggtgcaaaagttgattacgctatccccagccggatgcatgatggttatggcattaat
aaacgaattgtcgaagaattccacagcgaaggcgtggggttaattctcactgtggataat
gggatttccgcagttgaacctatcgccagagccagagaactaggattaaaggtaattgtc
accgaccatcacgacattccgcaacaattaccaccagctaacgcgattctcaacccgaaa
ttaatcgctgaatcttcaccctatcgcagtgttgcgggtgtaggtgtcgcctatatcttg
gcggtatctctcgcacaacagctaggcgagacaagaggcttaattcagccaatgctagca
ctgtttaccttaggaacgatcgcagatttagcaccgttaatcggcgtaaaccgtcgctgg
gtaaaacgcggtttacaactcttacccaaatcccatttaccagggatacaagcgttaatt
cagatggctggagttcaagcgagggaacaaggggacaaggggacaaggggacaaggggaa
gggggacaaggagtatattcttcctcatctcccttatcctcctcatctccctcatctcct
cccaatacaaaatccctcaagccggaggatattggctttaagctagggccgagaattaat
gctatcggtagaattggtgatccgcagattgtgattgatttgctgactacagatgatatg
gggatagcgctggaaagagcaatgcagtgcgaatctgtgaaccaacagcgccaggaaatg
tgcgagcaaattgaacaagaagcgatcgcttatgtagaaactgaatttatcacatcactc
ccgcaagaccgagtattagttgttgtgcaaccaaactggcatcatggtgtaattgggatt
gtcgcttctcgtttggtggaacgctacggtgtaccagtatttattggtacttatgaagat
gacacccatattcgcggttccgccagaggaattcccgaatttaatgtatttgaagcatta
caagcttgtcacgatttactaggtaaatatggtggacacaaagccgctgggggattttct
ttaccagcgccaaatttagcaaaattgcgatcgcgtttaattgagtttgctaatcaatgt
ttggaaccccagcacctcaagccactactaaaaattgatacccaagtcaattttagtgaa
atcaatcaccagctttatcagcagcttaatactctgcatccctgcggtatcgataacccc
gatcccgtcttctggactcctaatgtacaagtagttgagcaacaaatagtagggaagggt
catattaaactcacactagcccaaactatcgagcagcaacagtataaaattaaggcgatc
gcttggcgttggcgcgactactatcccctaccgtcgcgggtggatgttgcttataaactg
cgagaaaatcattttaacggcaatactgctattgagatggaactaataggtgtgcggcta
ccaacgcaatctcacctctttttccgttcctcaactcgtccgttaacaaccacctttgag
tacaaacagcgccattacacttgtggtatctttcaacaaaattccttaccagaattaaga
attaaaaattctgaaggcaaagttctagttatgcaaccagggcatacaatcggtttgcta
ggtaacagtcgtgaagatgccaaagaggttgatgtctgtgaaccacaatatgacaacatc
atccaagctgcgcttcaggctttgtctgtactgagttccaagtcctga
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