Altererythrobacter sp. B11: AEB_P1881
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Entry
AEB_P1881 CDS
T05671
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
alb
Altererythrobacter sp. B11
Pathway
alb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
alb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AEB_P1881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alb03021
]
AEB_P1881
Transcription machinery [BR:
alb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AEB_P1881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4168
NNH6
Disulph_isomer
Motif
Other DBs
NCBI-ProteinID:
BBC72749
LinkDB
All DBs
Position
complement(1970504..1972528)
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AA seq
674 aa
AA seq
DB search
MASEAKTSQNEDAPLIDLNEASIKKLIAKAKRRGYVTYDELNEALPSDQMSPDQIEDIQT
ALSEMGVQIVENDEDAQDDEDGNAEEASAAEEDEDESSDEPKNVPEKKKKETTERTDDPV
RMYLREMGAVELLSREGEIAIAKRIEAGRDTMIMGLCESPITFHAIIMWSEALNNGEMQL
REILDLDAMLSKEPPVDKMEEGEDDDSGEISEETAGPSIREDDEEEDEEETSEDDEEGEG
SSRRREEEDEDDNTLSLAQMEAALKPEALERFARIADLFKKFEKIQADRVSTLGSGEDFP
AAKEKQYEKLREDLTAEVESVQFHATKIEYLVDNLYAFNRRLTALGGQMLRLAERHKVKR
ADFLQHYIGNELDEGWLANMSKKDKKWAAFAEKEADAVERIRAEIADIAAATGMSLNEFR
RIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPT
PEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQAN
LKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK
HPSRSRKMRSFLDQ
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgaagccaagacctctcaaaacgaagatgcaccgctgatcgacctcaacgag
gcgtcgatcaagaagctgatcgcgaaggcgaagcgccgcggctatgtcacctatgacgag
ctgaacgaggcgctgccctccgaccagatgagccccgaccagatcgaggacatccagacg
gctttgtccgaaatgggcgtgcagatcgtcgagaacgacgaggacgcgcaggacgacgaa
gacggcaatgcggaagaggcttccgctgccgaagaggacgaggacgagagttccgacgag
cccaagaacgtcccggaaaagaagaagaaggaaacgaccgagcggaccgatgatccggtg
cgcatgtatctgcgcgaaatgggcgcggtggaactgctcagccgtgaaggcgagatcgcc
atcgccaagcgcatcgaagccggtcgcgacacgatgatcatgggcctgtgcgaaagcccg
atcaccttccacgccatcatcatgtggtccgaagcgctcaacaacggcgagatgcagctg
cgcgagatcctcgatctcgatgccatgctgtcgaaagagccgcccgtcgacaagatggaa
gagggcgaggacgacgacagcggcgagatcagcgaagagaccgccggcccctccatccgc
gaggatgacgaggaagaggatgaggaagagacctctgaggacgacgaggagggcgaaggc
tcgtcccgccgccgcgaggaggaggacgaggacgacaacacgctgagcctcgctcagatg
gaagcggccctgaagcccgaagcgctggagcgctttgcccgcatcgccgaccttttcaag
aagttcgagaagatccaggccgatcgcgtctccacgctcggcagcggtgaagacttcccc
gccgcgaaggaaaagcagtacgagaagctgcgcgaggatctgaccgccgaggtcgaaagc
gtgcagttccacgcgaccaagatcgaatatctggtcgacaatctctacgccttcaatcgc
cggctgacggcgcttggcgggcagatgctgcgcctggccgaacggcacaaggtgaagcgc
gccgatttcctccagcactatatcggcaacgagctcgatgaaggctggctcgccaacatg
tccaagaaggacaagaaatgggcggccttcgcggagaaagaagccgacgcggtggagcgc
atccgcgccgaaatcgccgacatcgcagccgccaccggcatgagtctcaacgagttccgc
cgcatcgtgaacatggtgcagaaaggcgagcgcgaggcccgcatcgcgaagaaggagatg
gtggaggccaatctccgcctcgtgatctcaatcgccaagaagtacaccaaccgcggcctg
cagttcctggacctcatccaggagggcaatatcggcctgatgaaggcggtcgataagttc
gaatatcgccgcggctacaagttcagcacctatgcgacctggtggatccgccaggcgatc
acccgctcgatcgccgatcaggcgcgcaccatccgtattccggtgcatatgatcgaaacg
atcaacaagctggtgcgcacaagccgccagttcctgcacgagcagggccgcgagcccacg
ccggaggaaatggccgagcgcctctccatgccgctggagaaggttcgcaaggtgatgaag
atcgccaaggagccgatctccctcgaaacgccgatcggcgacgaggaggattcgcatctg
ggcgacttcatcgaggacaagaatgcggtcatccccgtggatgcggccatccaggcaaat
ctcaaggaaaccgtaacccgggttctcgccagcctcactccgcgcgaggagcgcgtgctg
cgcatgcgcttcggcatcggcatgaacaccgatcacacgctggaagaggtcgggcagcag
ttttccgtgacgcgcgaacgaatccgccagatcgaagccaaggcgctgcggaagctcaag
catccgagtcgcagccgcaagatgcgcagcttcctcgatcagtaa
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