Acinetobacter lactucae: OTEC02_03225
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Entry
OTEC02_03225 CDS
T05220
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
alc
Acinetobacter lactucae
Brite
KEGG Orthology (KO) [BR:
alc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
alc03016
]
OTEC02_03225
Enzymes [BR:
alc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OTEC02_03225
Transfer RNA biogenesis [BR:
alc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OTEC02_03225
Prokaryotic type
tRNA splicing ligases
OTEC02_03225
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ARD27879
LinkDB
All DBs
Position
complement(655488..656693)
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AA seq
401 aa
AA seq
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MGIQKILNKEALYGVPVKIFTQDIDSESIEQLKKMAQLQFIYSHIAVMPDVHVGKGATVG
SVIPTKHAIIPAAVGVDIGCGMNAIRLSLKASQLPDNLSRLRDAIERKVPVGFALHKQVK
AKASSIIPLEKRLEPIIKKHPGLVRMLRQFDATWQKQLGTLGGGNHFIELCIDENQDVWV
MLHSGSRGLGNVIGTYFIELAKKEAQHRFGHVPDKDLSYFAQGSKSFDDYVEAVEWAQEY
AFENRKEMMRLILEAIRPLLPSFQMTKEAINCHHNYVSQETHFGENLFVTRKGAIRADLD
ELGIIPGSMGARSYIVKGKANPESFCSCSHGAGRKMSRSKAKVLFNQQDLIEQTQGIECR
KDSGVVDEIPSAYKDIDEVMANQSDLIEVVHTLKQVLCIKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgggcatacaaaaaatattaaacaaggaggcactctatggtgtccctgttaaaattttc
actcaagacatagatagtgaaagtatagaacaactcaaaaaaatggctcagctgcaattc
atctattctcacattgcagttatgcctgatgtgcatgtgggcaaaggtgctactgtaggt
agtgttattcctactaaacacgccattattcctgctgctgtaggagttgacattggatgt
ggaatgaatgcaattcgcttgagtttaaaggcttcacaactacctgataacttaagtcgt
ttgcgtgatgcgatcgaacgtaaagtaccggttggctttgctttgcataaacaagtcaaa
gcgaaagcttctagcattattccacttgaaaaacgcttagaaccaattatcaaaaagcat
cctggtcttgtccgaatgcttcggcaatttgatgcaacatggcaaaaacaacttgggact
ttgggtggtggtaatcactttatagagttatgtattgatgagaatcaagatgtatgggta
atgctacattcaggcagcagagggcttggtaatgttattggtacttactttattgagtta
gccaaaaaagaagcgcagcatcgctttggccatgtacctgataaagacttaagttatttt
gctcaaggctcaaaaagttttgatgattatgtagaagctgtagagtgggcacaagaatat
gcttttgaaaatcgcaaggagatgatgcgattaattttagaagctatccgccctcttcta
ccttcttttcaaatgacaaaagaagcaatcaattgtcaccataactatgtaagccaagaa
acacattttggtgaaaacctttttgttacaagaaaaggagcgattagagcagacttagat
gagctaggtattattccaggttcaatgggcgcacgatcttatattgttaaaggcaaagca
aatcctgaatcattttgttcttgttctcatggggctggtcgcaagatgagcagaagtaaa
gcaaaagttctttttaatcagcaagatcttattgaacaaacccaaggtattgaatgccgt
aaagacagtggcgttgtggatgaaattccaagcgcttataaagacattgatgaagtcatg
gcgaatcagtcagacctcattgaagtcgttcatactctaaaacaagttttatgtattaaa
ggttaa
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