Acinetobacter lactucae: OTEC02_03900
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Entry
OTEC02_03900 CDS
T05220
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
alc
Acinetobacter lactucae
Pathway
alc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
alc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OTEC02_03900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alc03021
]
OTEC02_03900
Transcription machinery [BR:
alc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OTEC02_03900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ARD27990
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Position
complement(792269..794155)
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AA seq
628 aa
AA seq
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MSDMHSPTSQVAALISRGKEQGYLTYAEVNDHLPDSITESEQIEDIIQMLQDVGIPVHER
APESDDTMFGESADATDEVAEEEAAAVLASVENEPGRTTDPVRMYMREMGTVELLTREGE
ISIAKRIEEGIRDVLNSIAYWPNAVEVVLKEYNDFLTGERRLADILSGYLDPETDEDIPE
VLEEVEELEEEDESSSKSTKEVKLDDDDEEEESEGDDDSEGDSGPDPEVAKVRFTELEAA
WAKTKAVVEKHGRNSPEAEEALEALATVFMMFKFTPRLFDIISEMIRGTHEQIRANEREI
MRYAVRRGRMDRTQFRTSFPKQESNPAWLDEQIAKAPAEIKAHLEKVRPDVLAFQQKIAD
IEKELSLSVAEIKDISKRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ
EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINRV
SRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQ
NITSPIDAATSEGLKEATREVLENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRER
IRQIEAKALRKLRHPSRSEHLRSFLEND
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatatgcattcccctacttctcaagtagcggctctgattagccgaggcaaagaa
caaggttacttaacttacgctgaggttaacgatcatctgccggactcgattactgaaagc
gaacagattgaagacattattcaaatgcttcaagacgttggtattcctgtacacgagcgt
gcacctgaatctgacgataccatgttcggtgagtcggctgacgcaactgatgaggttgct
gaagaagaagctgctgccgtacttgcatcggttgaaaatgagcctggacgtacgacagac
cctgtacgtatgtacatgcgtgaaatgggtacagttgagctgttaacccgtgaaggtgaa
atcagcattgccaagcgtattgaagaaggtatccgtgatgtccttaattcaattgcttac
tggccaaatgctgttgaagttgtattaaaagaatataatgatttcttaactggcgaacgc
cgtcttgccgatattttatctggctacctcgatcctgaaactgatgaagatattccagaa
gttttagaagaagttgaagagcttgaggaagaagacgaatcatcttcaaaatcaacgaaa
gaagttaagcttgatgatgacgatgaagaagaagagtctgaaggtgatgacgactctgaa
ggtgattcaggtccagatccagaagttgcaaaagttcgtttcaccgagcttgaagctgct
tgggctaaaacaaaagctgttgttgaaaaacatggtcgtaacagcccagaggcagaagaa
gctttagaagctttagctactgtgtttatgatgtttaaatttacaccacgtttatttgac
atcatctctgaaatgatccgtggtacacatgagcaaattcgtgccaatgaacgtgaaatc
atgcgttatgcagtacgtcgtggccgtatggatcgtactcaattccgtacatctttccct
aaacaagaatctaatccagcttggttagatgaacaaattgctaaagcccctgctgaaatc
aaggcgcatttagaaaaagttcgtccagatgttttagcattccaacaaaagattgcagat
attgagaaagagcttagtttaagcgttgctgaaattaaagatatctctaaacgtatggcg
attggcgaagcgaaagcacgtcgtgccaagaaagaaatggtagaagccaacctccgtttg
gtaatttcgattgcgaagaaatatactaaccgtggtttacagttccttgacttgattcaa
gaagggaacattggtttgatgaaagctgtagacaagtttgaataccgtcgtggttataaa
ttctcgacctatgcaacttggtggattcgtcaggcgattacccgttcgattgccgatcag
gctcgtacgattcgtattccagtacacatgattgaaacgattaacaagatcaaccgcgta
tctcgtcaattgttacaagaaatgggccgtgaaccaacacctgaagaattaggtgaacgt
ttagaaatggatgaagttaaggttcgtaaagtacttaaaattgctaaagaaccgatctca
atggaaacacctattggtgatgatgaagattcgcatcttggggatttcattgaagatcaa
aacatcacttctccaattgatgctgcgacttcagaaggcttaaaagaagcaactcgtgaa
gtattggaaaacttaactgaacgtgaagcaaaagtattgaagatgcgttttggtattgat
atgccaaccgatcacacacttgaagaagttggtaaacaatttgacgtaacacgtgaacgt
atccgtcagattgaagcgaaagcattgcgtaaattacgccacccttctcgttctgaacac
ttacgttctttcttggaaaatgactaa
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