Acinetobacter lactucae: OTEC02_17330
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Entry
OTEC02_17330 CDS
T05220
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
alc
Acinetobacter lactucae
Pathway
alc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OTEC02_17330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alc03021
]
OTEC02_17330
03400 DNA repair and recombination proteins [BR:
alc03400
]
OTEC02_17330
Enzymes [BR:
alc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OTEC02_17330
Transcription machinery [BR:
alc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OTEC02_17330
DNA repair and recombination proteins [BR:
alc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OTEC02_17330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ARD30369
UniProt:
A0A151YPP4
LinkDB
All DBs
Position
complement(3654627..3658820)
Genome browser
AA seq
1397 aa
AA seq
DB search
MKDLLDIMRKKTDSDGHAPIEFDRIRIGLASPEMIKSWSHGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECLCGKYKRMKYKGVICEKCGVEVTTAKVRRERMGHIELASPVAHIW
FLKSLPSRIGLLLDMTLRDIERVLYFESYVVTDPGMTPFEKYQLLTDEEYFNALEEHGDE
FTAKMGAEAVQDLLKDIDLEAEIARLREEIPQTTSETKLKKASKRLKLMEAFKDSNNKPE
WMVMNVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE
KRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI
TVGPTLRLHQCGLPKKMALELFKPFIFAKLQASGQATTIKAAKKMVERETPEVWDVLASV
IRQHPVMLNRAPTLHRLGLQAFEPILIEGKAIRLHPLVCAAFNADFDGDQMAVHVPLTLE
AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYITRDAVNAKGEGMVFADTHEVNR
ALATGQVAIHARVKVRVHQTVINENGEREHQTIIVDTTPGRCLLWEIVPQGLSFDMINLE
MTKKNISKLINSCYRKLGLKDTVIFADQLMYLGFRQATRSGVSVGMEDMLIPPTKQTIID
KAETEVREIEQQFEQGFVTAGERYNKVVDIWARTNDQVAKAMMDNLSYTLVKNKQGEDEK
QKSFNSIYMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVAQDLVITEPDCGTAGGLVMTPFIQGGDVIEPL
RDRVLGRVTAEDVRRASDDEVVLPRGTLIDEKIAAQLEEAGVDEVKVRSVIACESTFGVC
ARCYGRDLARGHLVNPGESVGVMAAQSIGEPGTQLTMRTFHVGGAASRTSAANSVQVRNK
GTVRFHNVKTVQHAKGHLVSVSRSGEIGIADDLGRERERYKLPYGASILLKDGEAVEAGG
IVATWDPHTHPLVTEVAGKARFSQIADGVTATSKTDDATGMTTVEILPVTARPASGKDLR
PAIVLDTTDGGEQFYFLPQNTIVTVRDGETIGVGDVIGRVPQETSRTRDITGGLPRVADL
FEARKPKEHAILAEVSGVVSFGKETKGKNRLVITPDDGSEIYEELIPKWRQINVFEGEHV
NRGETISDGPQNPHDILRLKGEVALTNYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKV
DITDGGDTSFIKGEQVDYIRVVQENQAVLAQNKFPAKFERQLMGITKASLSTDSFISAAS
FQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGLAYHLERRRQEAEAAEHELHND
FSEVDQAFSQALNSEQF
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctcgatatcatgcgtaagaaaacggactcagatggtcatgcaccaatt
gagtttgaccgtatccgtattggtcttgcgtcaccagaaatgattaagtcatggtctcat
ggtgaagttaaaaaacctgagacaattaactaccgtacttttaaaccagaacgtgacggt
ttgttctgtgccaaaatctttggtccagtaaaagattacgaatgcttgtgtggtaaatac
aagcgtatgaaatacaaaggcgtcatttgtgaaaaatgtggcgttgaagtaactacagcg
aaagttcgtcgtgaacgtatgggtcacattgaacttgcttctccagttgcacatatctgg
ttcttaaaatcgttaccgagccgtatcggtttattacttgatatgacactgcgtgatatc
gaacgtgtattgtatttcgaatcatacgttgtaactgaccctggtatgactccgtttgaa
aagtatcaacttttaacagacgaagagtacttcaatgcacttgaagaacacggtgatgaa
ttcactgcgaaaatgggtgcagaagcggttcaggacttgttgaaagatatcgatcttgaa
gctgaaatcgcacgtttacgtgaagaaatccctcaaacaacttctgaaacgaagttgaaa
aaagcgtctaaacgcttgaaattgatggaagcattcaaagattcaaacaacaagccagaa
tggatggtgatgaatgtacttcctgtacttccacctgatttacgtccattagttccactt
gaaggtggtcgtttcgcgacttctgacttgaacgatttatatcgtcgtgtcattaaccgt
aacaaccgtttgaagcgtcttcttgacctcgctgctccagatattatcgtacgtaacgaa
aaacgtatgttacaagagtctgtagatgcattgcttgataacggtcgtcgtggtcgtgca
attactggttctaacaagcgtccattaaaatctttggcagatatgatcaaaggtaaacaa
ggtcgtttccgtcagaacttattaggtaagcgtgttgactattcgggtcgttcggtaatt
actgtaggtcctactttacgtcttcaccaatgtggtctaccgaagaaaatggcacttgaa
ttattcaagccattcattttcgcgaaactacaagcttcaggtcaggcgactaccattaaa
gctgcgaagaaaatggtcgagcgtgagactccggaagtttgggacgttcttgcttcagta
attcgtcaacacccagtaatgttgaaccgtgcgccaacacttcaccgtttaggtcttcaa
gcatttgaacctattcttattgaaggtaaggcaatccgtcttcacccactcgtttgtgct
gcgtttaacgccgacttcgatggtgaccaaatggcggtacacgtaccattgacacttgaa
gcacagttagaagctcgtgcattgatgatgtcaacaaacaacatcttgtcaccagcaaac
ggtgaaccgatcattgttccttctcaggacgttgtcttgggtctttactacatcacacgt
gatgctgtaaatgccaaaggtgaaggcatggtgtttgcggatacgcatgaagtaaaccgt
gcacttgctactggtcaggttgcgatccatgcacgtgttaaagtacgtgtacatcaaact
gttatcaatgaaaatggtgagcgtgaacaccaaactattattgttgatacaactcctggt
cgttgtttgctttgggaaattgttccacaaggcttaagctttgacatgatcaaccttgag
atgactaaaaagaatatctctaaattgatcaactcttgctaccgtaaacttggtttgaaa
gatacagttatcttcgctgaccaattaatgtacttgggcttccgtcaagcgactcgttca
ggtgtatcggtaggtatggaagacatgcttattccacctactaagcagacaattattgat
aaagcggaaacagaagttcgtgaaatcgaacaacagttcgaacaaggtttcgtaactgct
ggtgagcgttataacaaagttgtcgatatctgggcgcgtacaaacgaccaagttgctaaa
gcaatgatggataacttgtcttatacacttgtgaaaaacaagcaaggtgaagacgagaag
caaaaatcattcaacagcatttatatgatgtctgactccggtgcccgtggtagtgcggcg
cagattcgtcagcttgctggtatgcgtggtttgatggcaaaaccggatggctcgattatt
gagactccgattaaagcgaacttccgtgaaggtttaacagtacttcagtactttatttct
acacacggtgcgcgtaaaggtttggccgatacagcattgaaaactgcgaactctggttac
ttgactcgtcgtcttgtagacgtagcgcaagacttggtaattactgaacctgactgtggt
acagcgggtggtttagtgatgactccattcattcagggcggtgatgtcattgagccatta
cgtgaccgcgtattaggtcgtgtaactgctgaagatgtacgtcgtgcatctgatgatgaa
gttgtattacctcgtggtacgttaattgacgagaaaatcgcagctcagcttgaagaagct
ggtgtcgatgaagttaaagtacgttcagtaatcgcatgtgaatcaacattcggtgtgtgt
gctcgttgttatggtcgtgaccttgcacgtggtcacttggtgaacccaggtgaatcagtg
ggtgtaatggctgcacagtcaattggtgagccaggtacacagttaacgatgcgtacgttc
cacgttggtggtgctgcgagccgaacttctgctgcgaacagtgttcaagtacgtaacaaa
ggtactgtacgtttccataacgtgaaaactgtacaacatgcaaaaggccacttggtttca
gtttcacgttcaggtgaaattggtattgccgatgatttaggtcgtgagcgtgagcgctat
aaacttccttacggtgcaagcatcttgttgaaagatggtgaagctgtagaagctggcggt
atcgtagcgacttgggatccgcatacacatccattggtaacagaagttgctggtaaagca
cgtttcagccaaatcgctgatggcgtaactgcaacatcgaaaactgatgatgcaactggt
atgactactgttgaaatcttgcctgtaacagctcgtcctgcttctggtaaagatttacgt
cctgcaatcgtgttggatacaacagatggcggcgaacagttctacttcttgccacaaaac
acaatcgtgactgtccgtgatggcgaaacgattggtgtgggtgacgttattggtcgtgta
ccacaagaaacatcacgtactcgtgatattaccggtggtcttccgcgtgtagctgacttg
ttcgaagcgcgtaaaccaaaagagcatgcaattcttgctgaagtatcaggcgttgtaagc
ttcggtaaagagactaagggtaaaaaccgtttggtaattactcctgatgatggttctgag
atttacgaagaattgattccaaaatggcgtcaaatcaacgtattcgaaggcgagcatgtg
aaccgtggtgaaactatttctgatggtccacaaaacccacatgacatcttgcgtttgaaa
ggtgaagttgcattaactaactacatcgtgaacgaagttcaagatgtttaccgtctccaa
ggtgtaaaaatcaacgataagcacattgaagttatcgtacgtcaaatgttgcgtaaagtt
gatatcactgatggtggtgatacaagcttcatcaaaggcgagcaagtggattacatccgt
gttgttcaagagaaccaagctgtcttggctcagaacaagttccctgcgaagtttgaacgt
caattaatgggtattacgaaagcatcgctttctactgactcgttcatctctgctgcatcg
ttccaggaaacaactcgtgtgttaactgaagcggctgtaacaggtaaagaagatgattta
cgtggcttgaaagaaaacgttgtagtaggtcgcttgattccagcaggtactggtcttgca
taccacctagaacgtcgtcgtcaagaagcagaagctgcagaacatgagcttcacaatgac
ttcagcgaagtagaccaagcattcagccaagcattaaactcagaacaattctaa
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integrated database retrieval system
