Alcanivorax sp. ALC70: ASALC70_00361
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Entry
ASALC70_00361 CDS
T09695
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
alca
Alcanivorax sp. ALC70
Pathway
alca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASALC70_00361 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alca03019
]
ASALC70_00361 (rne)
03009 Ribosome biogenesis [BR:
alca03009
]
ASALC70_00361 (rne)
Enzymes [BR:
alca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ASALC70_00361 (rne)
Messenger RNA biogenesis [BR:
alca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ASALC70_00361 (rne)
Ribosome biogenesis [BR:
alca03009
]
Prokaryotic type
rRNA processing factors
ASALC70_00361 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UWN48183
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All DBs
Position
337275..340730
Genome browser
AA seq
1151 aa
AA seq
DB search
MKRMLINATHPEEIRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRIEPSLEAAFVDF
GAERHGFLPLKEISRQYFQKDPKDIQGRINIKDVIKEGQEVIIQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGEERQQLKEALGSLRIPDEMGVIVRTAGLGRSAEE
LQWDLNYLLKLWGSIAEASETRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSQKVYDE
AQAFVQQVMTDFQHKIKLYNDDTPLFSRYQIESQIETAFEREVKLPSGGSIVIDPTEALV
SIDINSSRATKGADIEETALQTNLEAADEIARQLRLRDIGGLIVVDFIDMGPARNQREVE
NRMREALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGLGHIRDVKSLA
LSILRLIEEEVMKERTGEIQAQVPVAVGTFLLNEKRQVLREIEANHKVRVLVIPNPNLET
PHFEVERIRDDQTKALVSHELELHEGHKDPATVSAQDTEIKTQEPAVKVVAPDTAPPPPK
PEAEKPQAPKQQNKPQSRQQSKPRPAKAPAKGDQAPLQPGLLARFFTWLAALFSGSDEEQ
QARGKQRDDQRDGKTQGRGGRDANRGNRNDNRRGGQNRGKGGNQRGDGQRDPRGDNKADK
GNRDQNGQRDDKRKGGKDDGDNKAGDNRGGRNRNRRGGRGGNNRNNDNRDNRDNRDNRDN
RDNKSDNRPDNKSDGKPDNRQDNRQDNKGGAGNKGGDKQDKGPRKDDGPKAPRRNESKDD
RPLRERQRPAAKSDDGQDAPAQQPAKAQDGAPREEASTLPPRMTSEDNTPGRDQERGDSR
PPKAKLVPADEHAASQAARSDQAEQAAEAQAPQAAVKKTAEQQATVPDADRDQKPAAQAA
PADDRPKADQQPAPAPARDERPAETVKPAAEADQPKAEPAAPKPAGDEAAKSAEEAKPAA
EAQPATPAAEPADQARPAAPAPAEPAAEAPAEPAPKQPEAEQPQQPEPQQPAPPPRPPSS
RNRPPTPSRRRPRRPWTPSRNRRRPPRRSPRPGRPPKRPAPTATRPRRAAPPTTRAPARR
VRRRRVRRPSRSPRSRHRRPRRAPSRRPPSPSRSRRTSPPAGPATTRVSAVGSSRPSRRP
GTIRTPTPAPD
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgatcaatgccacgcaccccgaagaaattcgggttgcgctggtggat
ggccagagactctatgatctggacatcgagcatcgcacccgcgagcagaaaaaagccaat
atctacaaaggcaagatcacccgcatcgaaccctccctggaagccgccttcgtggacttc
ggcgccgagcgccacggcttcctccccctgaaggaaatctcccgccagtatttccagaag
gatcccaaggacatccagggtcgcatcaacatcaaggatgtgatcaaggaaggccaggaa
gtgatcatccaggtggacaaggaggagcgcggcaacaagggcgccgccctgaccaccttc
atcagcctggccggccgctacctggtgctgatgcccaacaacccccgcgccggcggcatt
tcccgccgcatcgagggcgaggagcgccagcagctcaaggaagccctgggcagcctgcgg
atcccggacgagatgggcgtgatcgtgcgcaccgcaggcctgggccgctccgccgaggaa
ctgcagtgggacctcaactacctgctcaaactgtggggctccatcgccgaggcgtccgag
acccgcaaggcgccattcctgatctatcaggaatccaacgtcatcatccgcgccatccgc
gactacctgcgcaaggacatcggcgaggtgctgatcgactcgcagaaggtctatgacgaa
gcccaggccttcgtgcagcaggtgatgaccgacttccagcacaagatcaagctgtacaac
gacgacacgccgctgttctcgcgctaccagatcgagtcgcagatcgagaccgccttcgag
cgtgaagtgaagctgccctccggcggctccatcgtcatcgaccccaccgaggcgctggtg
tccatcgacatcaactcctcccgcgccaccaagggcgcggacatcgaggaaaccgccctg
cagaccaacctggaggcggcggacgagatcgcccgccagctgcgtctgcgcgacatcggc
ggcctgatcgtggtggacttcatcgacatgggcccggcgcgcaaccagcgcgaggtggaa
aaccgcatgcgcgaagccctggaggcggaccgcgcgcgcatccagctgggccgcatctcc
cgcttcggcctgctggagctgtcccgccagcggctgcgccccagcctcggcgagacctcc
agcatcgtctgcccgcgctgtgacggcctgggccatatccgcgacgtgaaatccctggcc
ctgagcatcctccgcctgatcgaggaggaggtgatgaaggagcgcaccggcgagatccag
gcccaggtgccggtcgccgtgggcaccttcctgctcaacgagaagcgccaggtactgcgc
gagatcgaggccaaccacaaggtccgcgtgctggtcatccccaaccccaacctggaaacg
ccccacttcgaggtggagcgcatccgcgacgaccagaccaaggctctggtgagccacgag
ctggagctccacgaagggcacaaggacccggccacggtttccgcccaggacaccgagatc
aagacccaggagcccgccgtcaaggtggtcgctccggacaccgcgccgccgccgcccaag
ccggaggcggaaaagccccaggcgcccaagcagcagaataagccgcaaagcagacagcag
agcaagccgcggcccgccaaagcgcccgccaagggcgaccaggcacccctgcagcccggc
ctgctggcccgcttcttcacctggctggcggccctgttcagcggctccgacgaggagcag
caggcgcgcggcaagcagcgtgacgaccagcgcgacggcaagactcagggccgtggcggc
cgtgacgccaaccggggcaaccgcaacgacaaccgtcgcggcggccagaaccggggcaag
ggcggcaaccagcgtggtgacggccagcgcgacccgcgcggcgacaacaaagccgacaag
ggcaaccgcgaccagaacggccagcgcgacgacaagcgcaagggcggcaaggacgacggc
gacaacaaggccggcgacaaccgtggtggccgcaatcgcaaccgtcgtggcggtcgtggc
ggcaacaaccgcaataacgacaatcgtgataaccgcgataaccgcgataaccgcgataac
cgcgacaacaagtccgacaatcgtccggacaacaagagcgacggcaagcccgacaatcgt
caggacaaccgtcaagacaacaagggcggcgccggcaataaaggcggcgacaagcaggac
aagggtccgcgcaaggacgatggccccaaggccccgcgccgcaacgagtccaaggacgac
cggccgctgcgcgaacgccagcgccccgccgccaagagcgacgacggccaggacgctcct
gcccagcagccggccaaggcccaggacggcgcgccccgggaggaagcctccaccctgccc
ccgcgcatgacctcggaggacaacactccgggccgcgatcaggagcgcggtgacagccgg
ccgcccaaggccaagctggtgcccgccgacgagcacgcggccagccaggccgcccgaagc
gaccaggccgagcaggccgccgaggcccaggcgccccaggccgccgtgaagaaaaccgcc
gagcagcaggccaccgtgcccgacgccgaccgcgaccagaagccggcggcccaggccgct
ccggccgacgaccggcccaaggcggatcagcagcccgctccggcaccggcccgggacgag
cgtcccgccgagaccgtgaagccggccgccgaggccgaccagccgaaggcggagcccgcc
gcgcccaagccggccggcgatgaagccgccaaatcggctgaggaggccaaaccggccgcc
gaggcgcaaccggccacgccggcggcggaacccgccgaccaggcccgccccgccgctccg
gcaccggctgagccggccgccgaggccccggccgagccggcgccgaaacagcccgaggcc
gagcagccccagcagccggagccgcaacagccggccccgccgccgaggcccccaagcagc
cggaaccggccgccgacgccaagccggaggagaccccggcggccgtggacgccgagccga
aaccggaggcggccgccccggcgaagcccgaggccgggccggccgccgaagcgccccgcg
ccgacggcgaccaggccgcgccgcgccgcgccgccaacgacccgcgctcccgcgcgccgg
gtacgccggcgccgcgtccggcgcccaagccggagcccgagaagccggcaccggcggccc
aggagagcaccttcgaggcgccctccttcgccaagccgaagccggcggacatccccgccg
gccgggccggcaacgacccgcgtcagcgccgtcggcagcagcaggccgagcaggcgtccg
gggacgatcaggacgccaaccccggcgcctgattga
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