Alcanivorax sp. ALC70: ASALC70_00633
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Entry
ASALC70_00633 CDS
T09695
Symbol
mfd_3
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alca
Alcanivorax sp. ALC70
Pathway
alca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ASALC70_00633 (mfd_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alca03400
]
ASALC70_00633 (mfd_3)
Enzymes [BR:
alca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASALC70_00633 (mfd_3)
DNA repair and recombination proteins [BR:
alca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ASALC70_00633 (mfd_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UWN48453
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Position
601661..603415
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AA seq
584 aa
AA seq
DB search
MAAELLNTYARREARQGRPFGVESEDYERFASGFPFEETPDQEAAIRAVISDMQLAKPMD
RLVCGDVGFGKTEVAMRAAFVAVQSGAQVAVLVPTTLLAQQHYESFVDRFADWPVNIEVL
SRFRSAKEKAEVLDRLKAGKVDIIVGTHQLLQESVSFSDLGLIIVDEEHRFGVRHKERLK
ELRAECDILTLTATPIPRTLNMAMSGMRDISIIATAPQKRLSVKTFVQQRDSTAIKEAIL
RELLRGGQVYYLHNDIDTMARTAEELRKMVPDARVGIAHGQMRERELEAVMSDFYHRRFN
VLVCTTIIETGIDVPSANTIIIERADKLGLAQLHQLRGRVGRSHHQAYAYLITPSPRAMT
KDALKRLEAIEQATDLGAGFVLASQDLEIRGAGELLGEEQHGNMEAIGFSLYMEMLEQAV
EALKNGEQPDTAKPLSGGPEVNLRIPALIPEDYLPDVFTRLTLYKRIAGCKTTEQLEELQ
VEMIDRFGLLPEPLKNLFRVTALRQRAEALGITRLDAHPRGGKLEFAERTPVDPLTIVKL
VQSGPNLYKLEGASTLRFELESETAAERFEVVEGVLGRLAGGRG
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
gtggccgccgagttgctcaacacctacgcccgccgggaggcccgccagggccggccgttc
ggcgtcgagtcggaggactacgagcgcttcgccagcggtttcccgttcgaggaaacgccc
gaccaggaggccgccatccgcgccgtgatcagcgacatgcagctggccaagcccatggac
cggctggtgtgcggcgacgtgggcttcggcaagaccgaggtggccatgcgcgctgccttc
gtggcggtgcagagcggcgcccaggtggcggtgctggtgcccaccaccctgctcgcccag
cagcattacgagtccttcgtggaccgcttcgccgactggccggtgaacatcgaggtgctg
tcgcggttccgcagcgccaaggaaaaagccgaggtgctcgaccggctcaaggccggcaag
gtggacatcatcgtcggcactcaccagttgctgcaggagagcgtgtcgttctccgacctg
ggcctgatcatcgtcgacgaggagcaccgcttcggggtgcgccacaaggaacggctcaag
gaactgcgcgccgagtgcgacattctcacgctcaccgccacgccgattccacgcaccctg
aacatggccatgagcggcatgcgcgacatttccatcatcgccacggcgccacagaaacgg
ctgtcggtgaagaccttcgtgcagcagagggattccaccgccatcaaggaagcgatcctg
cgcgagctgctgcgcggcggccaggtctattacctgcacaacgacatcgacaccatggcg
cgcaccgccgaggaactgcgcaagatggtgccggacgcgcgggtcggcatcgcccacggg
cagatgcgcgagcgcgagctggaagcggtgatgagcgacttctaccaccgccgcttcaac
gtgctggtgtgcaccaccatcatcgagaccggcatcgacgtgcccagcgccaacaccatc
atcatcgagcgcgccgacaagctgggcctggcccagctgcaccagctgcgcggacgggtg
ggtcgcagccaccaccaggcctacgcctacctgatcacccccagcccgcgggccatgacc
aaggatgccctgaagcgcctggaggccatcgagcaggccaccgatctgggcgccggcttc
gtgctggccagccaggacctggagattcgcggcgccggcgagctgctcggcgaggagcag
cacggcaacatggaagcgatcggtttctcactgtacatggagatgctggaacaggcggtg
gaagcgctcaagaacggcgagcagccggacaccgccaagccgctgtccggcgggccggag
gtaaacctgcgcattccggcgctgatcccggaggattacctgccggacgtgttcacccgg
ctgacgctgtacaagcgcatcgccggctgcaagaccacggaacaattggaagagctgcag
gtggagatgatcgaccgcttcggcctgctgccggagccgctcaagaacctgttccgggtc
accgccctgcgccagcgcgccgaggccctgggcattacaaggctggacgcccacccgcgc
ggcggcaagctggagttcgccgagcgcacgccggtggacccgctcaccatcgtcaagctg
gtgcagtccgggcccaacctctacaagctggagggcgccagcaccctgcgcttcgagctg
gagtcggagaccgccgccgagcgcttcgaggtggtggaaggggtgctggggcggctggcc
ggtggccgcggttga
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