Alcanivorax sp. ALC70: ASALC70_00642
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Entry
ASALC70_00642 CDS
T09695
Symbol
topA_1
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
alca
Alcanivorax sp. ALC70
Brite
KEGG Orthology (KO) [BR:
alca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alca03032
]
ASALC70_00642 (topA_1)
03400 DNA repair and recombination proteins [BR:
alca03400
]
ASALC70_00642 (topA_1)
Enzymes [BR:
alca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ASALC70_00642 (topA_1)
DNA replication proteins [BR:
alca03032
]
Prokaryotic type
DNA Topoisomerases
ASALC70_00642 (topA_1)
DNA repair and recombination proteins [BR:
alca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ASALC70_00642 (topA_1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_TFIIB
YdjO
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
UWN48462
LinkDB
All DBs
Position
complement(611208..612983)
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AA seq
591 aa
AA seq
DB search
MMAQRLYEAGHITYMRTDSTNLSADAVNDCRAWIDDKLGGKYLPEKPNSYSSREGAQEAH
EAIRPSDVKREASGLKDMERDAQRLYELIRRQFIACQMPPAEYLSTTITAEADGYELKAR
GRILKFDGWTRIQPQASRKGQEDTVLPDLKQGDVLAVDDIDATQHFTKPPARYTEASLVK
ELEKRGIGRPSTYAAIISTIQDRGYVRQENRRFYAEKMGDIVTDRLAESFPDLMDYNFTA
EMEETLDEIAEGKRHWRDVLDEFYRDFLAKLDAAQGEGTGKQAKGGMRANLPTDTDIECP
KCGRPMQIRTGSTGVFLGCSGYSLPPKERCTATLNLLPGEEAEAVNADDEEAETNELRRK
KRCPKCGTAMESYLIDEKRKLHVCGNNPDCDGYLVEQGEFRIKGYDGPTLECEKCGSEMQ
LRTGRFGKFFKCTNDDCGNTRKLLKNGEPAPPRADPIPMPHLQCEKVDDHYLLRDGASGL
FLAASQFPKNRETRAPLIEEIQTVAGKLDPKHKYLADAPAEDTKGRKAVLRYSRKAKEQY
VMTEEDGKPTGWYAFYRDGRWEEEEKKTAPKKKAAAKKKKAAAKKAAARKS
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgatggcccagcgcctctacgaggccggccacatcacctacatgcggaccgactccacc
aacctgagcgccgacgcggtcaacgactgccgcgcctggatcgacgacaagctgggcggc
aagtacctgcccgagaagcccaacagctattccagccgcgagggcgcccaggaagcccac
gaggcgatccggccgtccgacgtcaagcgcgaggccagcggcctcaaggacatggagcgc
gacgcccagcgcctctacgagctgatccgccgccagttcatcgcctgccagatgccgccg
gcggagtacctgagcaccaccatcaccgccgaagccgatggctacgagctcaaagcccgc
ggccgcattctgaaattcgacggctggacccgcattcagccccaggcctcgcgcaagggc
caggaagacaccgtgctgccggacctcaagcagggcgatgtgctcgccgtggacgacatt
gacgccacccagcacttcaccaagccgccggcccgctacaccgaggcgagcctggtcaag
gagctggaaaagcgcggcatcggccgcccctccacctacgcggcgatcatctccaccatc
caggaccggggctacgtgcgccaggagaaccggcgcttctacgccgagaagatgggcgac
atcgtcaccgaccggctggcggaaagcttcccggacctgatggactacaacttcaccgcc
gagatggaggaaaccctggacgagatcgccgagggcaagcgccactggcgcgacgtgctc
gacgaattctaccgggacttcctggccaagctggacgccgcccagggcgaaggcaccggc
aagcaggccaagggcggcatgcgcgccaacctgcccacggacaccgacatcgagtgcccc
aaatgcggccgcccgatgcagatccgcaccggttccaccggcgtcttcctgggctgctcc
ggctacagcctgccgcccaaggaacgctgcacggcgaccctcaatctgctgcccggcgag
gaagccgaggcggtcaacgccgatgacgaagaggcggaaaccaacgagctgcgccgcaag
aagcgttgccccaagtgcggcacggcgatggaatcctacctcatcgacgagaagcgcaaa
ctgcacgtctgcggcaacaacccggactgcgacggctacctggtggagcagggcgaattc
cgcatcaagggctacgacggcccgaccctggaatgcgagaagtgcggcagcgaaatgcag
ctgcgcaccggccgcttcggcaagttcttcaagtgcaccaacgacgactgcggcaacacc
cgcaagctgctcaagaacggcgagccggcgccgccccgcgccgatccgatccccatgccg
catctgcaatgcgagaaggtggacgaccactacctgctgcgcgacggcgcctccggcctg
ttcctggccgctagccagttccccaagaaccgggaaacccgggcgccgctgatcgaggaa
atccagaccgtcgccggcaagctggaccccaagcacaagtacctggcggacgccccggcc
gaggacaccaagggccgcaaggcggtactgcgctacagccgcaaggccaaggagcagtac
gtgatgaccgaggaggacggcaagcccaccggctggtacgccttctaccgcgatggccgc
tgggaagaggaagagaagaaaaccgcgcccaagaaaaaagccgccgccaagaagaaaaag
gccgccgcgaaaaaggccgccgccaggaagagctga
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