Alcanivorax sp. ALC70: ASALC70_01215
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Entry
ASALC70_01215 CDS
T09695
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
alca
Alcanivorax sp. ALC70
Pathway
alca02020
Two-component system
alca02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
alca00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ASALC70_01215 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ASALC70_01215 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alca03021
]
ASALC70_01215 (rpoN)
Transcription machinery [BR:
alca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ASALC70_01215 (rpoN)
BRITE hierarchy
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
DUF1059
Motif
Other DBs
NCBI-ProteinID:
UWN49021
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All DBs
Position
1156198..1157610
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AA seq
470 aa
AA seq
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MTPQLQQAIRLLQLSTLDLRMEIQQAVENNPLLELEDGAEDFSADEPEGDADGDMELERD
DALDDLVEGPVETDSDWDDLYVGQSSAGGAGEGDDADAWQQRHANPVTLLEHLEWQLNLT
PMSDRDRVIAQIILEALDERGYVTVPLDDLLATAEAQIADPDDPVEEDEILAVLHRLQQF
DPVGVASRDLAECLGVQLAQLPADTAHLDTAGAILEHQEFLEKHDYAGLRRALGVGEADL
VEALALLRTLDPAPGQQIGGEDVDYAVPDVVVRAHRGGWRVELNEEVLPKVNLHAQYAHM
ARQVGGEDGQYLRNCMQEAKWFLKSLQSRNDTLLKVASRIVEVQQDFFNYGEEAMKPLVL
ADIAEAVEMHESTISRVTNQKFMLTPRGVFELKYFFSSHVDTDGGGECSSTAIRAIIKKL
VAAENPRKPLSDNKLANLLNDQGIKVARRTVAKYREAMRIPSSSSRKRLV
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgacgccccagctgcaacaggcgatccgcctgctgcagctgtcgacgctggacctgcgc
atggagatccagcaggcggtggaaaacaaccccctgctggagctggaggacggcgccgag
gacttttccgccgacgagccggaaggcgacgccgacggcgacatggagctggagcgcgac
gacgccctggacgatctggtcgagggtccggtggaaaccgacagcgactgggacgacctc
tacgtgggccagagcagcgccggcggcgccggtgaaggcgacgacgccgatgcctggcag
cagcgccacgccaacccggtgaccctgctggaacacctggaatggcagctcaacctgacc
cccatgagcgaccgcgaccgggtgatcgcccagatcattctggaagccctggacgagcgc
ggctacgtcaccgtgcccctggacgacctgctggccaccgccgaggcacagatcgccgac
ccggacgatccggtggaagaagacgagatcctggcggtgctgcaccggctgcagcagttc
gatccggtgggcgtggccagccgcgacctggccgagtgcctgggcgtgcagctcgcccag
ctgcccgccgacaccgcccacctggacaccgccggcgccattctcgagcaccaggagttt
ctggagaaacacgactacgccggcctgcgccgggccctgggcgtgggcgaggcggacctg
gtggaggccctggcgctgctgcgcaccctggacccggccccgggccagcagatcggcggc
gaggacgtggactacgcggtgcccgacgtggtggtgcgcgcccaccgtggcggctggcgg
gtggagctcaacgaggaagtactgcccaaggtcaacctgcacgcccaatacgcccacatg
gcccgccaggtgggcggcgaggacggccagtacctgcgtaactgcatgcaggaggccaaa
tggttcctgaagagcctgcagagccgcaacgacaccctgctcaaggtggccagccgcatc
gtcgaggtgcagcaggacttcttcaactacggcgaggaggccatgaagcccctggtgctg
gccgacatcgccgaggcggtggagatgcacgaatccaccatcagccgggtcaccaaccag
aagttcatgctcacgccacggggggtgttcgagctcaagtacttcttctccagccatgtg
gataccgacggcggcggtgagtgttcctccaccgccattcgtgccatcattaagaagctg
gtcgccgccgagaaccctcgcaagccgctcagcgacaacaagctggcgaacctgctcaac
gaccagggcatcaaggtggcgcgccgcaccgtcgccaagtaccgcgaggcgatgcgaatc
ccgtcctccagttcgcgcaagcggctggtttga
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