| Entry |
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| Symbol |
rpoB
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta
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| KO |
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| Organism |
alca Alcanivorax sp. ALC70
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:alca00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ASALC70_01500 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:alca03021]
ASALC70_01500 (rpoB)
03400 DNA repair and recombination proteins [BR:alca03400]
ASALC70_01500 (rpoB)
Enzymes [BR:alca01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ASALC70_01500 (rpoB)
Transcription machinery [BR:alca03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ASALC70_01500 (rpoB)
DNA repair and recombination proteins [BR:alca03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ASALC70_01500 (rpoB)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(1408210..1412352)
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| AA seq |
1380 aa
MAYSFTEKKRIRKDFGKLPKVMEVPYLLAIQLDSYRKFLQHDKSAEERLDAGLEAAFRSV
FPISSYSGNAALEYAGYEFGKPVFDVKECIIRGTTYAAPLRVRIRLVIYDKESNGAIKDI
REQQVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARVI
PYRGSWLDFEFDPKDLVYVRIDRRRKLPATILLRALGYTSDEILDTFFDTNEILFENGVY
RMRLVPERLRGETATFDILAGEEVVVERGRRVTARHIRQLEKANIEYLEIPAEYLHGRYL
AKSIIDQETGEVLVECNTELSADSLDKIENAGITTFETLYTNDLDHGPFMADTLRADPTR
SPLEALVEIYRMMRPGEPPTKEAAENLFRNLFFTDERYDLSGVGRMKFNRRLGRDDVTGP
GIVYDGRYFSARADDEGKQYFEQLGEEQSDIIDVLKTLVDIRNGNGVVDDIDHLGNRRIR
SVGEMAENQFRVGLVRVERAVKERLSLAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQF
MDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS
LASYARTNEYGFLESPYRKVIDGKVSEEIEYLSAIEEAECVIAQVDAKMNDDGSFVEDFV
TVRHRYEFTVMERDTITHMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLR
AEKPLVGTGMERHVARDSGVCVVAQRGGIVDKVDASRIIVKVNDDEVVEGEAGVDIYNLT
KYTRSNQNTCINQRPLVKVGDRVAARDIMADGPSVDMGELALGQNMRVAFMPWNGYNFED
SILISERVVKEDRFTSIHIQELTAIARDTKLGAEEITADIPNVGEAALGKLDESGIVYIG
AEVEAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVSSGVKGTVIDVQVF
TRDGVEKDERAKQIEQDALDKFRKDLKDEYRILEQDIKDRLRSVLLGKKVNGGAGLKRGT
ELTDAVLDELEGDKWFELRPADDDVAEQLERAHQYLEQHKKEQDERYKDKQAKISGGDDL
SHGVLKVVKVYLAIKRRIQPGDKMAGRHGNKGVISVIMPEEDMPYDENGVPVDVVLNPLG
VPSRMNVGQILETHLGWAAKGLGDRIGEMLDQERKVAEVRDFLDQIYNQTGAGGTDEDWS
HFEDQDIIELARNLRAGVPMATAVFDGAKEYEIKALLELAGQDRSGQIQLWDGRTGEQFD
RKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG
AAYTLQEMLTVKSDDVNGRTRIYKNIVDGDHRMDPGMPESFNVLLKEIRSLGINIELEND |
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| NT seq |
4143 nt +upstreamnt +downstreamnt
atggcatactcattcactgagaaaaagcggatccgcaaagatttcggcaagcttcccaag
gtcatggaggttccgtatctcctggccatacagctcgattcttaccgcaagttcttgcaa
cacgacaagagcgccgaggagcgcttggacgcaggcctggaagcggccttccggtcggtg
ttcccgatttccagctactccgggaacgcggccctcgagtatgccggctatgagttcggc
aaaccggtttttgatgtcaaagagtgcatcattcgtggcaccacctacgccgcgccgctg
cgcgtgcgtatccgtctggtgatctacgacaaggaatccaacggcgcgatcaaggacatc
cgcgaacagcaggtctacatgggcgagatcccgctcatgaccgaaaacggtaccttcgtg
atcaacggtaccgagcgggtgatcgtgtcccagctgcaccgctcgccgggcgtgttcttc
gaccacgacaagggcaagacccactcctcgggcaagctgctgtattccgcgcgggtgatt
ccctaccgcggttcctggctcgatttcgagttcgacccgaaggatctggtgtacgtgcgc
atcgaccgccgccgcaagctgccggcgacgatcctgctgcgcgcgctgggctacacgtcc
gacgagatcctcgacactttcttcgacaccaacgaaattctgttcgagaacggtgtctat
cgcatgcggctggtgccggagcgtctgcgtggtgaaaccgcgaccttcgatatcctggcc
ggcgaggaagtggtggtggagcgtggccgccgtgtcaccgcgcgccacatccgtcagctc
gaaaaagccaacatcgaataccttgagatccccgccgagtacctgcacggccgctacctg
gccaagtcgatcatcgaccaggaaaccggcgaggttctggtggagtgcaacaccgaactg
agcgccgacagcctcgacaagatcgagaacgccggcatcaccacgttcgagacgctctac
accaacgacctggaccacggcccgttcatggccgataccctgcgcgcggatcccacccgc
agcccgctcgaggcgctggtggaaatctaccgcatgatgcgtccgggcgagccgcccacc
aaggaagcggcggagaacctgttccgtaacctgttcttcaccgacgagcgctacgacctg
tccggcgtgggccgcatgaagttcaaccgccgcctcggccgtgacgatgtcaccggcccg
ggcatcgtctacgacggtcgctacttcagcgcccgcgccgatgatgaaggcaagcagtac
ttcgagcagctcggcgaagagcagtccgacatcatcgacgtgctcaagaccctggtggac
atccgcaacggcaacggcgtggtcgacgacatcgaccacctgggcaaccgccgcatccgt
tccgtgggcgagatggccgaaaaccagttccgcgtcggcctggtccgggtggagcgcgcc
gtcaaggagcgcctgagcctggccgagtccgaaggcctgatgccgcaggacctgatcaac
gccaaaccggtggccgccgcggtgaaggagttcttcggctcctcgcagctgtcccagttc
atggatcagaacaacccgctctccgagatcacccacaagcgtcgggtatccgcgttgggc
ccgggcggtctgacccgtgagcgcgccggtttcgaggtgcgtgacgtgcacccgacccac
tacggtcgcgtgtgtcccatcgagacgccggaaggtccgaacatcggcctgatcaactcc
ctggccagctacgcgcggaccaacgagtacggtttcctggaatcgccgtaccgcaaggtc
atcgacggcaaggtcagcgaggaaatcgagtacctgtccgccatcgaggaagcggagtgc
gtgatcgcgcaggtcgacgccaagatgaacgacgacggcagcttcgtggaagacttcgtc
accgtgcgtcaccgctacgaattcaccgtcatggagcgggacaccatcacccatatggat
gtctctccgcgccaggtggtgtccgtggccgcgtccctgattccgttcctggaacacgat
gacgcgaaccgcgctctgatgggttccaacatgcagcgtcaggcggtgccgaccctgcgc
gccgagaagcccctggtgggcaccggcatggagcgtcacgtggcccgggattccggcgtc
tgcgtggtggcccagcgtggcggtatcgtcgataaggtggatgcttcccgcatcatcgtc
aaagtgaacgacgacgaggtggtggaaggcgaagccggtgtggatatctacaacctcacc
aagtacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgaaggtgggc
gaccgggtggcggctcgcgacatcatggccgacggcccgtccgtggacatgggcgagctg
gccctgggccagaacatgcgcgtcgcgttcatgccctggaacggctacaacttcgaggat
tccatcctgatctccgagcgggtggtgaaggaggatcgctttacctccatccacatccag
gagctcaccgcgatcgcccgtgacaccaagctgggcgccgaggaaatcaccgccgacatc
cccaacgtgggcgaggcggccctgggcaaactggacgaatccggcatcgtgtacatcggc
gccgaggtggaagccggcgacattctggtcggcaaggtgacgcccaagggcgaaacccag
ctcaccccggaagagaagctgctgcgtgccatcttcggtgagaaggcctccgacgtgaag
gacacctccctgcgggtttcctccggcgttaaaggtaccgtcatcgacgttcaggtgttc
acccgcgacggcgtcgagaaagacgagcgcgccaagcagatcgaacaggatgccctggac
aagttccgcaaggacctgaaggacgagtaccggattctcgagcaggacatcaaggaccgt
ctgcggtccgtgctgctgggcaagaaggtcaacggcggcgccggcctcaagcgcggcacc
gagctgaccgatgcggtgctcgacgagttggaaggcgacaagtggttcgagctgcgcccg
gccgacgatgacgtggccgagcagctggagcgcgcgcaccagtacctggagcagcacaag
aaggaacaggacgagcgctacaaggacaagcaggccaagatctccggcggcgacgacctg
tcccacggcgtgctcaaggtggtcaaggtttacctggcgatcaagcgccgcatccagccc
ggcgacaagatggccggccggcacggtaacaagggtgtgatctccgtgatcatgcccgag
gaagacatgccctacgacgagaacggcgtccccgtggacgtggtcctcaacccgctgggc
gtaccgtcgcggatgaacgtggggcagattctcgagacccacctgggctgggccgccaag
gggctgggtgaccgcatcggcgagatgctggatcaggaacggaaagtcgccgaagtgcgc
gacttcctcgaccagatctacaaccagaccggcgccggcggcaccgatgaggactggagc
catttcgaggaccaggacatcatcgagctggcccgcaacctgcgcgccggcgtgcccatg
gccaccgccgtgttcgacggtgccaaggagtacgagatcaaggcgctgctggaactcgcc
ggccaggaccgttccggtcagatccagctttgggatggccgtaccggcgagcagttcgac
cgcaaggtgaccgtcggctacatgtacatgctgaagttgaaccacctggtggacgacaag
atgcacgcccgctccaccggctcctacagcctggtgacccagcagccgctgggtggtaag
gcgcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagcctacggc
gcggcgtatacgctgcaggaaatgctcaccgtgaagtcggacgatgtgaatgggcgcacg
cgcatttacaagaacatcgtcgacggcgatcaccggatggatccgggtatgccggagtcc
ttcaacgtactgctgaaggaaatccgttcgctcggtatcaacatcgagctggaaaacgac
tga |
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